; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g29290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g29290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:22038717..22039454
RNA-Seq ExpressionMoc09g29290
SyntenyMoc09g29290
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.1e-7067.98Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        MK KVPPKFKLP +K++DG+ D +DHLD Y EW DIYG++EA++CRVFS TL+GS R+WF+QLKR SISSFK LA+AFVTQF GG +RSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE
        +ATESL DYVARFN+EKLQVEGLT+AV L+ F+S ++DE L FSFGK+T  TFSEA SRAQ YMS GE   SKR+P+GK +D N  R+R G+K    RWE
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE

Query:  KRD
        + D
Subjt:  KRD

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]2.6e-132100Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
        RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR

Query:  DRSTRKIHPENLKNIRQLPFHSSKYNGDQRPKVVQMAREDEDTSA
        DRSTRKIHPENLKNIRQLPFHSSKYNGDQRPKVVQMAREDEDTSA
Subjt:  DRSTRKIHPENLKNIRQLPFHSSKYNGDQRPKVVQMAREDEDTSA

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]1.3e-6761.95Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        MK K  PKFKLP + ++DG+ D +DHLDAYREW DIY + EA++CRVFS TL+GSAR WFRQLKR SISSFK LA+AFVTQF+GGR +S+PV YLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE
        +ATESL +YVARFNEEKLQVEGLT+AV+L+AF+S ++DE L FSFGK+TP TF EALSRAQKYMSAGE     R+ E ++++ +  RER G+K   S WE
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE

Query:  KRDRSTRKIHPENLKNIRQLPFHSSK
        + D      H   ++   QL F  S+
Subjt:  KRDRSTRKIHPENLKNIRQLPFHSSK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.2e-9483.57Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        M+ KVPPKFKLPTVKQFD T D VDHLDAYREWMDIYGVSEAV+CRVFSTTL+GSAR+WFRQLKRGSISSFKSLA+AFVTQF+GGR RSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
        R TESL DYVARFNEEKLQVEGLT+AVSL+AFMS +RDEHLSFSFGK+TP+TFSEALSRAQ+YMSAGEFF+SKREP+GK++D  RERSGDKPQ SRWEKR
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR

Query:  DRSTRKIHPENLK
        DRS++K  P   +
Subjt:  DRSTRKIHPENLK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]8.3e-9181.34Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        M+ KVPPKFKLPTVK FDG  + VDHLDAYREWMDIYGVS+A++CRVFSTTL+GSAR+WFRQLKRGSISSFKSLA+AF+TQF+GGR RSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
        R  ESLHDYVARFNEEKLQ+EGLT+AVSL+AFMS +RDEHLSFSF K+TPSTFSEALSRAQ+YMSA EF +SKREP+GK++DQ RERSGDKPQ SRWEKR
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR

Query:  DRSTRKIHP
        DR ++K  P
Subjt:  DRSTRKIHP

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.0e-7067.98Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        MK KVPPKFKLP +K++DG+ D +DHLD Y EW DIYG++EA++CRVFS TL+GS R+WF+QLKR SISSFK LA+AFVTQF GG +RSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE
        +ATESL DYVARFN+EKLQVEGLT+AV L+ F+S ++DE L FSFGK+T  TFSEA SRAQ YMS GE   SKR+P+GK +D N  R+R G+K    RWE
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE

Query:  KRD
        + D
Subjt:  KRD

A0A6J1D7D2 uncharacterized protein LOC1110183071.2e-132100Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
        RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR

Query:  DRSTRKIHPENLKNIRQLPFHSSKYNGDQRPKVVQMAREDEDTSA
        DRSTRKIHPENLKNIRQLPFHSSKYNGDQRPKVVQMAREDEDTSA
Subjt:  DRSTRKIHPENLKNIRQLPFHSSKYNGDQRPKVVQMAREDEDTSA

A0A6J1DWY0 uncharacterized protein LOC1110252936.0e-9583.57Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        M+ KVPPKFKLPTVKQFD T D VDHLDAYREWMDIYGVSEAV+CRVFSTTL+GSAR+WFRQLKRGSISSFKSLA+AFVTQF+GGR RSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
        R TESL DYVARFNEEKLQVEGLT+AVSL+AFMS +RDEHLSFSFGK+TP+TFSEALSRAQ+YMSAGEFF+SKREP+GK++D  RERSGDKPQ SRWEKR
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR

Query:  DRSTRKIHPENLK
        DRS++K  P   +
Subjt:  DRSTRKIHPENLK

A0A6J1DZ49 uncharacterized protein LOC1110248516.3e-6861.95Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        MK K  PKFKLP + ++DG+ D +DHLDAYREW DIY + EA++CRVFS TL+GSAR WFRQLKR SISSFK LA+AFVTQF+GGR +S+PV YLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE
        +ATESL +YVARFNEEKLQVEGLT+AV+L+AF+S ++DE L FSFGK+TP TF EALSRAQKYMSAGE     R+ E ++++ +  RER G+K   S WE
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQN--RERSGDKPQWSRWE

Query:  KRDRSTRKIHPENLKNIRQLPFHSSK
        + D      H   ++   QL F  S+
Subjt:  KRDRSTRKIHPENLKNIRQLPFHSSK

A0A6J1E1E7 uncharacterized protein LOC1110255484.0e-9181.34Show/hide
Query:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ
        M+ KVPPKFKLPTVK FDG  + VDHLDAYREWMDIYGVS+A++CRVFSTTL+GSAR+WFRQLKRGSISSFKSLA+AF+TQF+GGR RSRPVAYLLTIKQ
Subjt:  MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ

Query:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR
        R  ESLHDYVARFNEEKLQ+EGLT+AVSL+AFMS +RDEHLSFSF K+TPSTFSEALSRAQ+YMSA EF +SKREP+GK++DQ RERSGDKPQ SRWEKR
Subjt:  RATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKR

Query:  DRSTRKIHP
        DR ++K  P
Subjt:  DRSTRKIHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGAAGGTCCCTCCAAAATTCAAGCTACCCACGGTGAAACAATTCGACGGGACAGTCGACCTAGTGGACCATCTAGATGCTTATCGAGAATGGATGGATATCTA
TGGGGTGTCAGAGGCCGTCAAATGTCGGGTGTTCTCGACCACATTAAGCGGGTCAGCCAGAGTGTGGTTTCGACAATTAAAACGAGGTTCAATTTCGAGCTTCAAAAGCT
TGGCTAAGGCATTCGTAACCCAGTTTATAGGGGGACGAAGTCGGAGCCGACCCGTGGCTTATCTTCTAACTATTAAACAGAGAGCGACAGAGAGCCTACACGACTATGTG
GCTCGATTCAACGAGGAAAAGCTACAGGTGGAGGGCCTCACAAACGCTGTATCTCTAATGGCCTTCATGTCCGACATCAGGGATGAGCACTTATCATTCTCATTCGGGAA
GAAGACACCGAGCACCTTCTCGGAGGCGCTGAGCCGAGCTCAGAAGTACATGAGCGCGGGTGAGTTCTTTTTCTCAAAGAGGGAGCCAGAAGGAAAACAATCCGACCAGA
ATAGAGAGAGGTCGGGAGATAAGCCACAATGGTCGAGATGGGAGAAAAGAGATCGGAGTACCAGAAAGATCCACCCCGAAAATTTGAAAAATATACGCCAACTACCGTTC
CACTCGAGCAAGTACAATGGAGATCAAAGACCAAAGGTTGTTCAAATGGCCAGAGAGGATGAAGACACCTCCGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGAAGGTCCCTCCAAAATTCAAGCTACCCACGGTGAAACAATTCGACGGGACAGTCGACCTAGTGGACCATCTAGATGCTTATCGAGAATGGATGGATATCTA
TGGGGTGTCAGAGGCCGTCAAATGTCGGGTGTTCTCGACCACATTAAGCGGGTCAGCCAGAGTGTGGTTTCGACAATTAAAACGAGGTTCAATTTCGAGCTTCAAAAGCT
TGGCTAAGGCATTCGTAACCCAGTTTATAGGGGGACGAAGTCGGAGCCGACCCGTGGCTTATCTTCTAACTATTAAACAGAGAGCGACAGAGAGCCTACACGACTATGTG
GCTCGATTCAACGAGGAAAAGCTACAGGTGGAGGGCCTCACAAACGCTGTATCTCTAATGGCCTTCATGTCCGACATCAGGGATGAGCACTTATCATTCTCATTCGGGAA
GAAGACACCGAGCACCTTCTCGGAGGCGCTGAGCCGAGCTCAGAAGTACATGAGCGCGGGTGAGTTCTTTTTCTCAAAGAGGGAGCCAGAAGGAAAACAATCCGACCAGA
ATAGAGAGAGGTCGGGAGATAAGCCACAATGGTCGAGATGGGAGAAAAGAGATCGGAGTACCAGAAAGATCCACCCCGAAAATTTGAAAAATATACGCCAACTACCGTTC
CACTCGAGCAAGTACAATGGAGATCAAAGACCAAAGGTTGTTCAAATGGCCAGAGAGGATGAAGACACCTCCGCCTAA
Protein sequenceShow/hide protein sequence
MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYV
ARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQSDQNRERSGDKPQWSRWEKRDRSTRKIHPENLKNIRQLPF
HSSKYNGDQRPKVVQMAREDEDTSA