CuGenDBv2

Gene ID	Moc09g29330
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Genome location	chr9:22073597..22078114
RNA-Seq Expression	Moc09g29330
Synteny	Moc09g29330
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016301 - kinase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]

4.1e-46

48.56

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKDVLIQSGLHK LKGRP+   S   S           + +   +S MSDEDWE++DLRAAS I++ LAKN+LAN+HGISTAK+LWEKLE LYQ KG+
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I VKI+DED+ALRLI SLP SYEHMKPIL++GK+ + F+E                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNR-AGSSKG
                KKK+S++ K  CWGCGQSGH+KK+CP   AGS+ G
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNR-AGSSKG

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]

6.6e-44

47.9

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKDVLIQSGLHK L+G+P+  +SK  SG                 S   DE+WE++DLRAAS I++ LAKN+LANVHGISTAK+LWEKLE LYQ KGI
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I VK+ DEDKALRLILSL  SYEHMKPILMYGK+TL +A+                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  ------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSS
               KK   Q    CW CGQSGH+K++CP  A S+
Subjt:  ------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSS

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]

2.5e-43

47.48

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKDVLIQSGLHK L+G+P+  +SK  SG                 S   DE+WE++DLRAAS I++ LAKN+LANVHGISTAK+LWEKLE LYQ KGI
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
         NR                           I+ ELE I VK+ DEDKALRLILSL  SYEHMKPILMYGK+TL +A+                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  ------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSS
               KK   Q    CW CGQSGH+K++CP  A S+
Subjt:  ------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSS

KAG7577502.1 F-box associated domain type 1 [Arabidopsis thaliana x Arabidopsis arenosa]

8.6e-44

45.85

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKD+LIQ GLHK LKG+P+  T  +                 S K  +SD DWE++DLRAAS I++ LAKNILANVHGISTAKELWEKLE LYQAKG+
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I VK++DED ALRLI SLP SYEHMKPIL++GK+ + F E                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  -------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSS--KGFGRDADIVYT
               KK++ ++ K  CWGCGQSGH+K++CPN  G S  +    D D  YT
Subjt:  -------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSS--KGFGRDADIVYT

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]

3.9e-73

68.64

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKDVLIQS LHK LKGRPSEG S+KLS DGGPMESSGGSSRGSKKSSMS EDWEEMDLRAAS I+  LAKNILANVH ISTAKELWEKLEALYQAKGI
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           IIFELE I+VKI+DEDKALRLILSLP SYEHMKPILMYGKDTLNFAE                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNR
                KKKDSVQ KACCWGCGQSGHMKKDCPNR
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNR

TrEMBL top hits

e value

%identity

Alignment

A0A6A2YS90 Transcription initiation factor IIA subunit 2

3.1e-39

43.95

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKD+LIQSGL+K LKG+P+         +G   +    SS    KS MS+E+WEE+D+RAAS I++ LAKN+LANV   S+ KELWEKLE +YQAK +
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I V+I+DEDKALRLI SL  SYEHM+ +LMYGK+ +NF+E                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPN-RAGSSKGFGRDA
                KK    + K  CWGCGQ GH+KKDC N  A S+ G   DA
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPN-RAGSSKGFGRDA

A0A6A3BK59 CCHC-type domain-containing protein

3.6e-40

44.35

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKD+LIQSGL+K LKG+P+         +G   +    SS    KS MS+E+WEE+D+RAAS I++ LAKN+LANV   S+ KELWEKLE +YQAK +
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I V+I+DEDKALRLI SLP SYEHM+ +LMYGK+ +NF+E                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPN-RAGSSKGFGRDA
                KK    + K  CWGCGQ GH+KKDC N  A S+ G   DA
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPN-RAGSSKGFGRDA

A0A6A3CWI3 CCHC-type domain-containing protein

1.4e-39

43.55

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKD+LIQSGL+K LKG+P+         +G   +    SS    KS MS+E+WEE+D+RAAS I++ LAKN+LANV   S+ KELWEKLE +YQAK +
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I V I+DEDKALRLI SLP SYEHM+ +LMYGK+ +NF+E                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSSKGFGRDAD
                KK    + K  CWGCGQ GH+KKDC N  G++   G  +D
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNRAGSSKGFGRDAD

A0A6A3DA47 CCHC-type domain-containing protein

8.1e-40

44.35

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKD+LIQSGL+K LKG+P+         +G   +    SS    KS MS+E+WEE+D+RAAS I++ LAKN+LANV   S+ KELWEKLE +YQAK +
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           I+ ELE I V+I+DEDKALRLI SLP SYEHM+ +LMYGK+ +NF+E                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPN-RAGSSKGFGRDA
                KK    + K  CWGCGQ GH+KKDC N  A S+ G   DA
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPN-RAGSSKGFGRDA

A0A6J1CG82 uncharacterized protein LOC111010521

1.9e-73

68.64

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Query:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI
        VQVKDVLIQS LHK LKGRPSEG S+KLS DGGPMESSGGSSRGSKKSSMS EDWEEMDLRAAS I+  LAKNILANVH ISTAKELWEKLEALYQAKGI
Subjt:  VQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGI

Query:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------
        SNR                           IIFELE I+VKI+DEDKALRLILSLP SYEHMKPILMYGKDTLNFAE                       
Subjt:  SNRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAE-----------------------

Query:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNR
                KKKDSVQ KACCWGCGQSGHMKKDCPNR
Subjt:  --------KKKDSVQNKACCWGCGQSGHMKKDCPNR

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-16

26.62

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Query:  QVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGIS
        +++D+LIQ GLHKVL                             K  +M  EDW ++D RAAS I++ L+ +++ N+    TA+ +W +LE+LY +K ++
Subjt:  QVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGIS

Query:  NRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDT-----------LNFAEKKKDSVQNKAC--
        N+                           +I +L  + VKI +EDKA+ L+ SLP SY+++   +++GK T           LN   +KK   Q +A   
Subjt:  NRF--------------------------IIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDT-----------LNFAEKKKDSVQNKAC--

Query:  ---------------------------------CWGCGQSGHMKKDCPN-RAGSSKGFGRDAD
                                         C+ C Q GH K+DCPN R G  +  G+  D
Subjt:  ---------------------------------CWGCGQSGHMKKDCPN-RAGSSKGFGRDAD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGGGAGCGAATTATGTATAAGGATATGGAAGAGTTGGTGTACTTTTCGGTGAAAATTGAAAAGCAAATTCAGAGGCACAAATCGAGTTATTTTCTGCTTATTTCTGC
GGTAGAAGTAGGAGATTTTTTCCCATCAAGTGGTATGAGAGCTTTAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGTGTTGAAGGGAAGACCGAGTG
AAGGTACTTCGAAAAAGCTAAGCGGTGATGGTGGTCCAATGGAATCTAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCTAGTATGAGTGATGAAGATTGGGAGGAAATG
GATTTGAGAGCTGCAAGCATGATACAAATAGGTTTGGCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAGCCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTA
TCAGGCAAAGGGCATCTCAAATCGGTTCATCATCTTTGAGCTGGAGGTGATCAAAGTGAAGATAAATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTT
CTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGGATACTTTGAATTTTGCTGAGAAGAAGAAAGACTCCGTACAAAATAAAGCTTGTTGCTGGGGATGCGGACAA
TCTGGGCACATGAAGAAAGATTGTCCCAACAGAGCTGGTTCGTCAAAGGGCTTTGGGCGAGATGCTGACATTGTTTACACATGGGCATTGGCTTGGCGGTTATGCAAGGT
GTGTGTGGTGGAAGTTATGTCGATGGTTGAAGAACTTCCAGTGGGTGTATGGTCCCGTCCTGCCCATGGTGCGGTCAGCTATGATATACTAAACTTCTTCTTGGGGAAGT
TCATCTACAACATCTGGCGGTGCCCTCGTGGGCACGTTCCTCTCAGGGTCGGCTACCTCTCCTATCCGCTTCTCTACAAGGTCGACCTTCTTCTTCCTTCAGACCGGGCC
AAGCCTTTAGATATCGGGATTGAGCCAACGGTAGAAGTGGAGGAGGTGGCTGGCAGCGACAGTACGACGGAGGTAGAGTATCGGAGATGA

mRNA sequence

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Protein sequence

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MRERIMYKDMEELVYFSVKIEKQIQRHKSSYFLLISAVEVGDFFPSSGMRALVQVKDVLIQSGLHKVLKGRPSEGTSKKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEM
DLRAASMIQIGLAKNILANVHGISTAKELWEKLEALYQAKGISNRFIIFELEVIKVKINDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAEKKKDSVQNKACCWGCGQ
SGHMKKDCPNRAGSSKGFGRDADIVYTWALAWRLCKVCVVEVMSMVEELPVGVWSRPAHGAVSYDILNFFLGKFIYNIWRCPRGHVPLRVGYLSYPLLYKVDLLLPSDRA
KPLDIGIEPTVEVEEVAGSDSTTEVEYRR

Moc09g29330 (gene) of Bitter gourd (OHB3-1) v2 genome