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Moc09g29470 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g29470
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:22214363..22215272
RNA-Seq ExpressionMoc09g29470
SyntenyMoc09g29470
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.9e-4089.8Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MS SIIALL A +LNGENYKQWKSNLNTILVIDDL+FVLQEDC QA APNATVAVR AYDRW+KANDKAKVYILASISDVLAKKHEDT+TAKEIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

XP_022157449.1 uncharacterized protein LOC111024145 [Momordica charantia]3.9e-3374.75Show/hide
Query:  SMSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        S S SIIALL A K N ENY QWK+NLNTILV+DDLRF+L E+C QAP PNA  A R+AYDRW+KANDKA VYIL SISDVL+KKHE  VTA+EIMDSL
Subjt:  SMSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]2.6e-3784.69Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MS SII LL A KLN ENYKQWKSN+NTIL+IDDLRFVLQEDC QAPAPNATVAVRN YDRW+KANDKAKV ILASISDVLAKKHE++V  KEIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]3.9e-4190.82Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MSASIIALL A KLNGENY+QWKSNLNTILVIDDLRFVLQEDC QAP  NATVAVRNAYDRW+K+NDKAKVYILASISDVLAKKHEDTVT KEIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

XP_022158202.1 uncharacterized protein LOC111024739 [Momordica charantia]2.5e-3273.47Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MS S+IALL   KLNG+NY QWK+NLN ILV+DDLRFVL E+C Q P PNA  A R+AYDRW+KANDKAKVYI ASISDVLAKKH+  VT +EIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

TrEMBL top hitse value%identityAlignment
A0A6J1DFZ2 uncharacterized protein LOC1110200959.4e-4189.8Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MS SIIALL A +LNGENYKQWKSNLNTILVIDDL+FVLQEDC QA APNATVAVR AYDRW+KANDKAKVYILASISDVLAKKHEDT+TAKEIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

A0A6J1DW68 uncharacterized protein LOC1110246371.3e-3784.69Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MS SII LL A KLN ENYKQWKSN+NTIL+IDDLRFVLQEDC QAPAPNATVAVRN YDRW+KANDKAKV ILASISDVLAKKHE++V  KEIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

A0A6J1DWI4 uncharacterized protein LOC1110241451.9e-3374.75Show/hide
Query:  SMSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        S S SIIALL A K N ENY QWK+NLNTILV+DDLRF+L E+C QAP PNA  A R+AYDRW+KANDKA VYIL SISDVL+KKHE  VTA+EIMDSL
Subjt:  SMSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

A0A6J1DWL0 uncharacterized protein LOC1110247341.9e-4190.82Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MSASIIALL A KLNGENY+QWKSNLNTILVIDDLRFVLQEDC QAP  NATVAVRNAYDRW+K+NDKAKVYILASISDVLAKKHEDTVT KEIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

A0A6J1DWL4 uncharacterized protein LOC1110247391.2e-3273.47Show/hide
Query:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL
        MS S+IALL   KLNG+NY QWK+NLN ILV+DDLRFVL E+C Q P PNA  A R+AYDRW+KANDKAKVYI ASISDVLAKKH+  VT +EIMDSL
Subjt:  MSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCCTCGTGTCGCCCTGGGCGCGGCCTCCCTACGGAAGGTGTTTGCATGGTTCAATATCGAGCATGTCTGCTTCCATTATTGCACTCTTAGACGCTCCA
AAACTTAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCTTCAAGCTCCT
GCGCCTAATGCCACTGTGGCAGTGCGCAACGCCTATGACAGGTGGGTCAAGGCCAATGACAAAGCCAAGGTCTACATCCTGGCGAGCATATCTGATGTGCTTGCC
AAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCCTCGTGTCGCCCTGGGCGCGGCCTCCCTACGGAAGGTGTTTGCATGGTTCAATATCGAGCATGTCTGCTTCCATTATTGCACTCTTAGACGCTCCA
AAACTTAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCTTCAAGCTCCT
GCGCCTAATGCCACTGTGGCAGTGCGCAACGCCTATGACAGGTGGGTCAAGGCCAATGACAAAGCCAAGGTCTACATCCTGGCGAGCATATCTGATGTGCTTGCC
AAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGTAG
Protein sequenceShow/hide protein sequence
MLGLVSPWARPPYGRCLHGSISSMSASIIALLDAPKLNGENYKQWKSNLNTILVIDDLRFVLQEDCLQAPAPNATVAVRNAYDRWVKANDKAKVYILASISDVLA
KKHEDTVTAKEIMDSL