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Moc09g29480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g29480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:22215339..22220783
RNA-Seq ExpressionMoc09g29480
SyntenyMoc09g29480
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-7362.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSW+QL+ GEMT++VGTG VVSA+A   +  YL K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-7262.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-7262.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-7262.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-7262.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein7.5e-7362.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

A0A5A7TU93 Gag/pol protein2.0e-7362.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSW+QL+ GEMT++VGTG VVSA+A   +  YL K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

A0A5A7TWB9 Gag/pol protein7.5e-7362.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

A0A5A7TZD7 Gag/pol protein7.5e-7362.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

A0A5A7V4M1 Gag/pol protein7.5e-7362.84Show/hide
Query:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG
        MNEG SVREH+LN+MVHFNVAE NGAVIDE SQVSFI+ESLP+SFL FR+NAVMNK+ YTLTTLLNELQT++SLM  KGQ+GEANV TS ++F+RGS+SG
Subjt:  MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTS-KRFNRGSSSG

Query:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV
        TK  PSS G+K +KKKK  G+G+K + AAA T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHV
Subjt:  TKFAPSSFGSKTFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHV

Query:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS
        CSSFQGISSWRQL+ GEMT++VGTG VVSA+A   +   L K   LL     YV+  + R+
Subjt:  CSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKELLSQFKKYVIWQVPRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGGGTTTCTCAGTGCGAGAACACATTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTCAT
TATGGAATCTCTTCCGAAGAGTTTTCTGCCATTCCGCAACAATGCAGTTATGAATAAGCTTCAGTATACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTC
TTATGAACAGTAAGGGACAAGAAGGGGAGGCAAACGTTACCACCTCAAAAAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTTTGCGCCCTCTTCTTTTGGAAGTAAG
ACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTTCGCTGCTGCCGCTACCAAGAAAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTG
CAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCCAACGAAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTT
CCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTCGGAACAGGAAAGGTCGTCTCAGCTGTGGCGAACAGCAGGATGGAGCGCTACCTCAACAAAGTTAAAGAA
CTACTCAGTCAGTTCAAAAAGTACGTGATTTGGCAAGTGCCGAGGTCAGACAACTCTAACACCGATAACGTCGATGCATTAGCTCGGCTTGCTTCAGCATATGAAACTGA
TCTACGTCGGTCTGTCCCAGTAGAAGTCCTGAATGATCCATCCATTGATCGAGAATATGTGATGGACATCCAACCTACCTCCCCTATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGAGGGTTTCTCAGTGCGAGAACACATTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTCAT
TATGGAATCTCTTCCGAAGAGTTTTCTGCCATTCCGCAACAATGCAGTTATGAATAAGCTTCAGTATACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTC
TTATGAACAGTAAGGGACAAGAAGGGGAGGCAAACGTTACCACCTCAAAAAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTTTGCGCCCTCTTCTTTTGGAAGTAAG
ACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTTCGCTGCTGCCGCTACCAAGAAAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTG
CAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCCAACGAAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTT
CCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTCGGAACAGGAAAGGTCGTCTCAGCTGTGGCGAACAGCAGGATGGAGCGCTACCTCAACAAAGTTAAAGAA
CTACTCAGTCAGTTCAAAAAGTACGTGATTTGGCAAGTGCCGAGGTCAGACAACTCTAACACCGATAACGTCGATGCATTAGCTCGGCTTGCTTCAGCATATGAAACTGA
TCTACGTCGGTCTGTCCCAGTAGAAGTCCTGAATGATCCATCCATTGATCGAGAATATGTGATGGACATCCAACCTACCTCCCCTATATAG
Protein sequenceShow/hide protein sequence
MNEGFSVREHILNLMVHFNVAESNGAVIDEQSQVSFIMESLPKSFLPFRNNAVMNKLQYTLTTLLNELQTYQSLMNSKGQEGEANVTTSKRFNRGSSSGTKFAPSSFGSK
TFKKKKAAGKGSKPDFAAAATKKGKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEGATNHVCSSFQGISSWRQLDAGEMTLKVGTGKVVSAVANSRMERYLNKVKE
LLSQFKKYVIWQVPRSDNSNTDNVDALARLASAYETDLRRSVPVEVLNDPSIDREYVMDIQPTSPI