; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g30000 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g30000
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:22628257..22629408
RNA-Seq ExpressionMoc09g30000
SyntenyMoc09g30000
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.2e-2445.71Show/hide
Query:  KSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDGSADLVDHLDAYREWMDIHG
        KSP P+GGKSD   +++EPI L K K  +R E  EK+ +QK+KGF+LEELLDQADSPFT+EI+ EK                          R    +H 
Subjt:  KSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDGSADLVDHLDAYREWMDIHG

Query:  VLEPKPTHGLSSDHQIESNREPDYVARFNKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA
                              DYV RFNKE+LQVE LT AVSLLAF+F ++DEHLSFSFGK+  +  SE +SRA
Subjt:  VLEPKPTHGLSSDHQIESNREPDYVARFNKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA

XP_022145129.1 uncharacterized protein LOC111014646 [Momordica charantia]7.0e-3949.77Show/hide
Query:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------------------------PPKGK
        MTPERS RRS+D+C A+R+LNL DPQVGG E+   + NLE QEGLPE +      P Q+                                    P KGK
Subjt:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------------------------PPKGK

Query:  RPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSP
         P +SE EESTNS G    +GGN +RRT+IFDS   QK KK  K   P+GG+SD   +N+EP+ L K K  ++ E  EK+ +QKEKGF+LEELLDQADSP
Subjt:  RPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSP

Query:  FTKEIIGEKVHSKFKLPTVKQ
        FT+EI+ EKV  KFKLPTVKQ
Subjt:  FTKEIIGEKVHSKFKLPTVKQ

XP_022155816.1 protein SPIRRIG [Momordica charantia]2.4e-3975Show/hide
Query:  PPKGKRPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLD
        P KGK P+ESE+EESTNSVG    L  NIKRRT+ FDS+GQQK KK QKSPVPDGGKS+  +QNAEPIDL K KST+R EL E+QQS+KEKGF+LEELLD
Subjt:  PPKGKRPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLD

Query:  QADSPFTKEIIGEKVHSKFKLPTVKQFD
        QADSPF +EI+GEKV  KFKLPTVKQFD
Subjt:  QADSPFTKEIIGEKVHSKFKLPTVKQFD

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.9e-6950.14Show/hide
Query:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------PPKGKRPVESEAEESTNSVG---
        MTPERS RRS+DDC A+R+LNLGDPQVGG E+   + N E QEGL E        P Q+                  P KGK P ES+ EESTNSVG   
Subjt:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------PPKGKRPVESEAEESTNSVG---

Query:  -LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPT
         +GGN ++RTRIFD    +K KK  KSP P+GGKSD   +N+EPI L K K  +R E  EK+ S KEKGF+LEELLDQADSPFT+EI+ EKV  KFKLPT
Subjt:  -LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPT

Query:  VKQFDGSADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARF
        VKQFD + D VDHLDAYREWMDI+GV E                                                +P   L +  Q  +    DYVARF
Subjt:  VKQFDGSADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARF

Query:  NKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA
        N+E+LQVE LT AVSLLAFM  ++DEHLSFSFGK+  N  SE +SRA
Subjt:  NKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.4e-4248.13Show/hide
Query:  KRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDG
        +RRTRIFDS   QK KK  KS  P+G K+D   +N+EPI L K K  +R E  EK+ +QKEKGF+LEELL QADSPFT+EI+ EKV  KFKLPTVK FDG
Subjt:  KRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDG

Query:  SADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARFNKEELQ
          + VDHLDAYREWMDI+GV +                                                +P   L +  Q  +    DYVARFN+E+LQ
Subjt:  SADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARFNKEELQ

Query:  VECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA
        +E LT AVSLLAFM  ++DEHLSFSF K+  +  SE +SRA
Subjt:  VECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.1e-2445.71Show/hide
Query:  KSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDGSADLVDHLDAYREWMDIHG
        KSP P+GGKSD   +++EPI L K K  +R E  EK+ +QK+KGF+LEELLDQADSPFT+EI+ EK                          R    +H 
Subjt:  KSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDGSADLVDHLDAYREWMDIHG

Query:  VLEPKPTHGLSSDHQIESNREPDYVARFNKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA
                              DYV RFNKE+LQVE LT AVSLLAF+F ++DEHLSFSFGK+  +  SE +SRA
Subjt:  VLEPKPTHGLSSDHQIESNREPDYVARFNKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA

A0A6J1CUA7 uncharacterized protein LOC1110146463.4e-3949.77Show/hide
Query:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------------------------PPKGK
        MTPERS RRS+D+C A+R+LNL DPQVGG E+   + NLE QEGLPE +      P Q+                                    P KGK
Subjt:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------------------------PPKGK

Query:  RPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSP
         P +SE EESTNS G    +GGN +RRT+IFDS   QK KK  K   P+GG+SD   +N+EP+ L K K  ++ E  EK+ +QKEKGF+LEELLDQADSP
Subjt:  RPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSP

Query:  FTKEIIGEKVHSKFKLPTVKQ
        FT+EI+ EKV  KFKLPTVKQ
Subjt:  FTKEIIGEKVHSKFKLPTVKQ

A0A6J1DSV3 protein SPIRRIG1.2e-3975Show/hide
Query:  PPKGKRPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLD
        P KGK P+ESE+EESTNSVG    L  NIKRRT+ FDS+GQQK KK QKSPVPDGGKS+  +QNAEPIDL K KST+R EL E+QQS+KEKGF+LEELLD
Subjt:  PPKGKRPVESEAEESTNSVG----LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLD

Query:  QADSPFTKEIIGEKVHSKFKLPTVKQFD
        QADSPF +EI+GEKV  KFKLPTVKQFD
Subjt:  QADSPFTKEIIGEKVHSKFKLPTVKQFD

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-6950.14Show/hide
Query:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------PPKGKRPVESEAEESTNSVG---
        MTPERS RRS+DDC A+R+LNLGDPQVGG E+   + N E QEGL E        P Q+                  P KGK P ES+ EESTNSVG   
Subjt:  MTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQR------------------PPKGKRPVESEAEESTNSVG---

Query:  -LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPT
         +GGN ++RTRIFD    +K KK  KSP P+GGKSD   +N+EPI L K K  +R E  EK+ S KEKGF+LEELLDQADSPFT+EI+ EKV  KFKLPT
Subjt:  -LGGNIKRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPT

Query:  VKQFDGSADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARF
        VKQFD + D VDHLDAYREWMDI+GV E                                                +P   L +  Q  +    DYVARF
Subjt:  VKQFDGSADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARF

Query:  NKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA
        N+E+LQVE LT AVSLLAFM  ++DEHLSFSFGK+  N  SE +SRA
Subjt:  NKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA

A0A6J1E1E7 uncharacterized protein LOC1110255486.6e-4348.13Show/hide
Query:  KRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDG
        +RRTRIFDS   QK KK  KS  P+G K+D   +N+EPI L K K  +R E  EK+ +QKEKGF+LEELL QADSPFT+EI+ EKV  KFKLPTVK FDG
Subjt:  KRRTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDG

Query:  SADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARFNKEELQ
          + VDHLDAYREWMDI+GV +                                                +P   L +  Q  +    DYVARFN+E+LQ
Subjt:  SADLVDHLDAYREWMDIHGVLE-----------------------------------------------PKPTHGLSSDHQIESNREPDYVARFNKEELQ

Query:  VECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA
        +E LT AVSLLAFM  ++DEHLSFSF K+  +  SE +SRA
Subjt:  VECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCATAATCCACGTATCAACAATTGGCGTCGTCTGTGGGGAAGAAGCAAGCCATACAGTCTAACAAACATGACGCCGGAAAGAAGTCTACGACGCTCTAACGATGA
TTGCCATGCAAGGAGAAAGTTAAACTTGGGTGACCCCCAAGTAGGAGGATCCGAGAACAAGGTGGACCGACAAAACCTAGAACACCAAGAAGGGCTGCCTGAGAACAACA
GGAGGCATCGACGTACCCCTCATCAGAGACCTCCGAAAGGGAAAAGACCAGTAGAGAGCGAGGCTGAAGAATCGACAAACAGTGTAGGGCTAGGTGGAAACATCAAACGA
CGAACTCGGATTTTCGACTCCCAAGGCCAGCAAAAGGGTAAAAAGCCACAGAAATCCCCAGTACCAGATGGGGGCAAGAGCGACCAAGGAAGACAAAATGCCGAGCCCAT
AGACCTCTACAAAAGCAAATCGACCAATCGGGCCGAGCTGTTAGAAAAGCAGCAAAGTCAAAAAGAGAAGGGGTTCAACCTCGAAGAGCTACTAGATCAAGCCGACTCAC
CGTTTACAAAGGAGATCATAGGGGAGAAGGTCCATTCAAAATTCAAGCTACCAACGGTGAAGCAATTCGATGGGTCAGCCGATCTGGTAGACCATCTTGACGCCTACCGA
GAATGGATGGACATTCACGGGGTGTTAGAGCCGAAGCCGACCCATGGCTTATCATCTGACCATCAAATAGAGAGCAACAGAGAGCCTGACTATGTGGCTCGGTTTAATAA
AGAGGAATTACAGGTTGAATGCCTCACATATGCAGTGTCTCTACTAGCTTTTATGTTCGACATCAAGGATGAGCACCTATCATTCTCTTTCGGGAAAAAGATGATGAACA
ACTTATCAGAGTTGATGAGTCGGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCATAATCCACGTATCAACAATTGGCGTCGTCTGTGGGGAAGAAGCAAGCCATACAGTCTAACAAACATGACGCCGGAAAGAAGTCTACGACGCTCTAACGATGA
TTGCCATGCAAGGAGAAAGTTAAACTTGGGTGACCCCCAAGTAGGAGGATCCGAGAACAAGGTGGACCGACAAAACCTAGAACACCAAGAAGGGCTGCCTGAGAACAACA
GGAGGCATCGACGTACCCCTCATCAGAGACCTCCGAAAGGGAAAAGACCAGTAGAGAGCGAGGCTGAAGAATCGACAAACAGTGTAGGGCTAGGTGGAAACATCAAACGA
CGAACTCGGATTTTCGACTCCCAAGGCCAGCAAAAGGGTAAAAAGCCACAGAAATCCCCAGTACCAGATGGGGGCAAGAGCGACCAAGGAAGACAAAATGCCGAGCCCAT
AGACCTCTACAAAAGCAAATCGACCAATCGGGCCGAGCTGTTAGAAAAGCAGCAAAGTCAAAAAGAGAAGGGGTTCAACCTCGAAGAGCTACTAGATCAAGCCGACTCAC
CGTTTACAAAGGAGATCATAGGGGAGAAGGTCCATTCAAAATTCAAGCTACCAACGGTGAAGCAATTCGATGGGTCAGCCGATCTGGTAGACCATCTTGACGCCTACCGA
GAATGGATGGACATTCACGGGGTGTTAGAGCCGAAGCCGACCCATGGCTTATCATCTGACCATCAAATAGAGAGCAACAGAGAGCCTGACTATGTGGCTCGGTTTAATAA
AGAGGAATTACAGGTTGAATGCCTCACATATGCAGTGTCTCTACTAGCTTTTATGTTCGACATCAAGGATGAGCACCTATCATTCTCTTTCGGGAAAAAGATGATGAACA
ACTTATCAGAGTTGATGAGTCGGGCTTAG
Protein sequenceShow/hide protein sequence
MEHNPRINNWRRLWGRSKPYSLTNMTPERSLRRSNDDCHARRKLNLGDPQVGGSENKVDRQNLEHQEGLPENNRRHRRTPHQRPPKGKRPVESEAEESTNSVGLGGNIKR
RTRIFDSQGQQKGKKPQKSPVPDGGKSDQGRQNAEPIDLYKSKSTNRAELLEKQQSQKEKGFNLEELLDQADSPFTKEIIGEKVHSKFKLPTVKQFDGSADLVDHLDAYR
EWMDIHGVLEPKPTHGLSSDHQIESNREPDYVARFNKEELQVECLTYAVSLLAFMFDIKDEHLSFSFGKKMMNNLSELMSRA