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Moc09g30260 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g30260
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr9:22793220..22793564
RNA-Seq ExpressionMoc09g30260
SyntenyMoc09g30260
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148138.1 uncharacterized protein LOC111016891 [Momordica charantia]2.6e-1860.22Show/hide
Query:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        + L +     + N   GWLVDS C NHMT+DK LFKD DKSFKSRVKI NG +YL+VKGK T+S +S  GTKLI +V FV  IDQ+LLS G L
Subjt:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

XP_022151646.1 uncharacterized protein LOC111019554 [Momordica charantia]5.7e-1860.22Show/hide
Query:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        + L +     + N   GWLVDS C NHMT+D  LFKD DKSFKSRVKIGNG +YL VKGK T+S +S  GTKLI  V FV  IDQ+LLS G L
Subjt:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

XP_038885771.1 uncharacterized protein LOC120076063 [Benincasa hispida]1.3e-1770.13Show/hide
Query:  GWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        GWLVDS   NHMT+DK LFKD DKSFKSRVKIGN  +YL+VKGKDT+S +S   TKLIT+V FV  IDQ+LLS G L
Subjt:  GWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

XP_038889190.1 uncharacterized protein LOC120079069 [Benincasa hispida]2.0e-1871.43Show/hide
Query:  GWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        GWLVDS C NHMT DK LFKD DKSFK RVKIGNG +YL+VKGK T+S +S AG KLIT V FV  IDQ+LLS G L
Subjt:  GWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

XP_038902496.1 uncharacterized protein LOC120089156 [Benincasa hispida]9.7e-1870.13Show/hide
Query:  GWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        GWL DS C N MT+DK LFKD DKSFKSRVKIGN  +YL+VKGK T+S +S AGTKLIT+V FV  IDQ+LLS G L
Subjt:  GWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

TrEMBL top hitse value%identityAlignment
A0A1U8HV73 uncharacterized protein LOC1078898732.6e-1662.03Show/hide
Query:  IVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        I  WLVDS C NH+T D+ LFKD D+S KS+V IGNG +YL+VKG+  ++ +SYAGTKLI+DV FV  IDQ+LLS G L
Subjt:  IVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

A0A1U8LPK3 uncharacterized protein LOC1079286331.5e-1650.53Show/hide
Query:  KKKINSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFG
        K++   L +  +  +  +   WLVDS C NHM  ++ +FKD D+S KSRV+IGNG +YL+VKGKDT++ +SY GTK+ +DV FV  IDQ+LLS G
Subjt:  KKKINSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFG

A0A6J1D394 uncharacterized protein LOC1110168911.2e-1860.22Show/hide
Query:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        + L +     + N   GWLVDS C NHMT+DK LFKD DKSFKSRVKI NG +YL+VKGK T+S +S  GTKLI +V FV  IDQ+LLS G L
Subjt:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

A0A6J1DFA6 uncharacterized protein LOC1110195542.8e-1860.22Show/hide
Query:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        + L +     + N   GWLVDS C NHMT+D  LFKD DKSFKSRVKIGNG +YL VKGK T+S +S  GTKLI  V FV  IDQ+LLS G L
Subjt:  NSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

A0A6J1DWT9 uncharacterized protein LOC1110251494.4e-1667.11Show/hide
Query:  WLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL
        WLVDS C N M +DK LFKD D+SFKSRVKIGNG +YL+VKGK T S +S  GTKLIT+V FV  I Q+LLS G L
Subjt:  WLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSFGLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAAAAACTCAACAGCAAGGAGGAGCACATGATGCAGTACAACAAGAAGAAGATAAACTCTTTATTGCTACCTGTTTTTCATGAGACGCTCAATGTGATAGTTGG
TTGGTTGGTTGATAGTGAATGTATCAATCACATGACAACTGACAAAGTATTGTTCAAGGACTTTGACAAGTCATTCAAGTCAAGGGTGAAGATAGGGAATGGTCATAAGT
ATCTAAAAGTGAAGGGGAAGGATACAATGTCAACAAAGAGCTATGCTGGAACCAAGTTAATTACTGATGTGTACTTTGTTTCTGTGATTGATCAAGACCTGTTAAGTTTT
GGTCTACTAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAAAAACTCAACAGCAAGGAGGAGCACATGATGCAGTACAACAAGAAGAAGATAAACTCTTTATTGCTACCTGTTTTTCATGAGACGCTCAATGTGATAGTTGG
TTGGTTGGTTGATAGTGAATGTATCAATCACATGACAACTGACAAAGTATTGTTCAAGGACTTTGACAAGTCATTCAAGTCAAGGGTGAAGATAGGGAATGGTCATAAGT
ATCTAAAAGTGAAGGGGAAGGATACAATGTCAACAAAGAGCTATGCTGGAACCAAGTTAATTACTGATGTGTACTTTGTTTCTGTGATTGATCAAGACCTGTTAAGTTTT
GGTCTACTAGAATAG
Protein sequenceShow/hide protein sequence
MKQKLNSKEEHMMQYNKKKINSLLLPVFHETLNVIVGWLVDSECINHMTTDKVLFKDFDKSFKSRVKIGNGHKYLKVKGKDTMSTKSYAGTKLITDVYFVSVIDQDLLSF
GLLE