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Moc09g30350 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g30350
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S17, chloroplastic
Genome locationchr9:22874055..22874642
RNA-Seq ExpressionMoc09g30350
SyntenyMoc09g30350
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]1.9e-4492.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHW+VAEILRKARIY PPSQD Q+ SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]1.9e-4492.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHW+VAEILRKARIY PPSQD Q+ SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]4.2e-4492.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_022155383.1 uncharacterized protein LOC111022528 [Momordica charantia]1.3e-48100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_038891417.1 30S ribosomal protein S17-like [Benincasa hispida]4.2e-4491.26Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRV+LDPSRPLSKHKHW+VAEILRKARIY PPS+D+Q  SDKSKA+AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        ST+
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic2.0e-4492.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic2.0e-4492.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic2.0e-4492.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

A0A6J1DMT5 30S ribosomal protein S17, chloroplastic6.1e-49100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic1.7e-4390.29Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK W+VAEILRKARIY PPSQ++Q  SDK K +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S178.3e-1953.01Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPP
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K W+V  IL ++++   P
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPP

A8ZV66 30S ribosomal protein S171.4e-1855.84Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA
        +Q  G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GD+V +  SRPLS+ KHW V  ++ KA
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA

B1I1J7 30S ribosomal protein S174.0e-2164Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+HK W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARI

Q6LVA7 30S ribosomal protein S171.4e-1852.63Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARI

Q8R7W3 30S ribosomal protein S176.3e-1958.11Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein2.9e-3570.59Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK+KHW+VAEI++KARIY P +  +  S+  S ++A 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  ST
        +T
Subjt:  ST

AT1G79850.1 ribosomal protein S171.6e-0941.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K ++   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein1.4e-3471Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSKHKHW+V+EI++KARIY P +  +  +S  S A  P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein1.6e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWMVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWMVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTGGGAATGGTGGTCTCGAACAAAATGCAGAAATCGGTGGTAGTTGCGGTGGATAGGTTGTTCTATCACAAACTCTACAATCGCTACGTCAAGCGCAC
TTCCAAGTTCATGGCTCATGATGAGAACAACCAGTGCAATATTGGTGATCGAGTTAAATTAGACCCGTCTAGGCCATTAAGCAAGCATAAACATTGGATGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACGTACCACCATCACAAGATAGCCAGACTTCTTCAGACAAAAGCAAAGCAGCAGCTCCTTCAACCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGGTAGTGGGAATGGTGGTCTCGAACAAAATGCAGAAATCGGTGGTAGTTGCGGTGGATAGGTTGTTCTATCACAAACTCTACAATCGCTACGTCAAGCGCAC
TTCCAAGTTCATGGCTCATGATGAGAACAACCAGTGCAATATTGGTGATCGAGTTAAATTAGACCCGTCTAGGCCATTAAGCAAGCATAAACATTGGATGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACGTACCACCATCACAAGATAGCCAGACTTCTTCAGACAAAAGCAAAGCAGCAGCTCCTTCAACCACTTAA
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAPSTT