CuGenDBv2

Gene ID	Moc09g30480
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:22947707..22952458
RNA-Seq Expression	Moc09g30480
Synteny	Moc09g30480
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]

3.1e-11

48.57

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ
        S +FE+ KF+G GD +LWRKK++A+LVQ KV+K++ E+++P+ +++ +K++M+E  +ST++LYLSD VL+
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.3e-12

51.43

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ
        S +FE+ KF+G GD SLWRKK++A+LVQ KV+K++ E+++PD +++ +K++M+E  +ST++LYLSD VL+
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ

TYK05815.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.1e-11

39.22

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV
        S +FE+ KF+G GD ++WRKK++A+LVQ KV+K++ E ++P+ +++ +K++M+E  +ST++LYLSD VL+            + L   YL K L +K+ +
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV

Query:  AE
         E
Subjt:  AE

TYK11792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.3e-12

41.18

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV
        S +FE+ KF+G GD +LWRKK++A+LVQ KV+K++ E+++PD +++ +K++M+E  +ST++LYLSD VL+            + L   YL K L +K+ +
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV

Query:  AE
         E
Subjt:  AE

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.3e-12

41.18

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV
        S +FE+ KF+G GD +LWRKK++A+LVQ KV+K++ E+++PD +++ +K++M+E  +ST++LYLSD VL+            + L   YL K L +K+ +
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV

Query:  AE
         E
Subjt:  AE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUE4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-11

39.22

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV
        S +FE+ KF+G GD +LWRKK++ +LVQ KV+K++ E+++P+ +++ +K++M+E  +ST++LYLSD VL+            + L   YL K L +K+ +
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV

Query:  AE
         E
Subjt:  AE

A0A5A7U459 Putative polyprotein

1.5e-11

48.57

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ
        S +FE+ KF+G GD +LWRKK++A+LVQ KV+K++ E+++P+ +++ +K++M+E  +ST++LYLSD VL+
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ

A0A5A7UB25 Putative gag-pol polyprotein

3.0e-12

51.43

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ
        S +FE+ KF+G GD SLWRKK++A+LVQ KV+K++ E+++PD +++ +K++M+E  +ST++LYLSD VL+
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQ

A0A5D3CQJ5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.0e-12

41.18

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV
        S +FE+ KF+G GD +LWRKK++A+LVQ KV+K++ E+++PD +++ +K++M+E  +ST++LYLSD VL+            + L   YL K L +K+ +
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV

Query:  AE
         E
Subjt:  AE

A0A5D3DNU1 Putative gag-pol polyprotein

3.0e-12

41.18

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Query:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV
        S +FE+ KF+G GD +LWRKK++A+LVQ KV+K++ E+++PD +++ +K++M+E  +ST++LYLSD VL+            + L   YL K L +K+ +
Subjt:  SAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVI-EKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYL-KDLDSKVEV

Query:  AE
         E
Subjt:  AE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-05

36.76

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Query:  KFEIEKFDGKGDLSLWRKKLKALLVQQKVSKV--IEKKIPDTVSDEKKQEMEETVFSTMILYLSDTVL
        K+E+ KF+G    S W+++++ LL+QQ + KV  ++ K PDT+  E   +++E   S + L+LSD V+
Subjt:  KFEIEKFDGKGDLSLWRKKLKALLVQQKVSKV--IEKKIPDTVSDEKKQEMEETVFSTMILYLSDTVL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGGCCAAGTTTGAAATTGAAAAATTTGATGGGAAAGGCGATTTAAGCCTTTGGAGGAAGAAATTGAAGGCCCTGCTGGTCCAACAGAAAGTTTCGAAAGTAATCGA
GAAGAAGATACCTGATACAGTTTCAGATGAGAAGAAACAAGAAATGGAAGAGACCGTATTCAGTACTATGATTTTATATCTGTCTGATACAGTTCTCCAGCAATGGGCGT
CAGGTCTGAACAAATCTCCTGACCCCCAGGCCTTGGTGGACCAGTACTTGAAGGACCTGGACTCTAAGGTCGAGGTGGCGGAGGGAGAAGACGACAAAGGCATCTCATCC
CAAGAGATCGATGGGGCAAACATCCCTGCTGTTGGCGTAGCTTCTTCCCAAGAGGTTGAGGCCCTGAACTCTCAGGCGCTTGACATACTAGCTTTTCAGAGAGAGCTCAG
GCCACACCTCAGAAGCAATTAG

mRNA sequence

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Protein sequence

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MSAKFEIEKFDGKGDLSLWRKKLKALLVQQKVSKVIEKKIPDTVSDEKKQEMEETVFSTMILYLSDTVLQQWASGLNKSPDPQALVDQYLKDLDSKVEVAEGEDDKGISS
QEIDGANIPAVGVASSQEVEALNSQALDILAFQRELRPHLRSN

Moc09g30480 (gene) of Bitter gourd (OHB3-1) v2 genome