; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g31330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g31330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr9:23711345..23713247
RNA-Seq ExpressionMoc09g31330
SyntenyMoc09g31330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU44375.1 hypothetical protein TSUD_243070 [Trifolium subterraneum]2.6e-1841.26Show/hide
Query:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL
        +S + + LS + F +  +  +P     IRS G+E H+  ++   + E+ D   + + NP    W+  DGLLTSWLLG   E+ ++MI G D+AH++W SL
Subjt:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL

Query:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL
         EQLL  T++ E  L  +L  L+KG L+L++YI KFK+LCDKL
Subjt:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL

PNY16899.1 copia-like polyprotein, partial [Trifolium pratense]1.7e-1741.96Show/hide
Query:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL
        +S + L LS + F +  +  +P     IRS G+E H+  N+   + E+ D   +  +NP    W   DGLLTSWLLG   E+ L+MI G D+A+++W SL
Subjt:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL

Query:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL
         EQLL  T++ E  L  +L  L+KG L+L++YI KFK+LC+KL
Subjt:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL

XP_015887026.1 probable leucine-rich repeat receptor-like protein kinase At1g35710 [Ziziphus jujuba]2.4e-1637.43Show/hide
Query:  RTEQKCQRADLDSATRSTVSSASLAFSASLHLFSSLPRPDTSWL----DLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHLKNSDPQEAEVEDKDDSLMS
        R EQ     DL+   +  + S S+ F   +  F SL   D S      +L L L   ++    P+      IRS GI  HL +  P  A++ +K+     
Subjt:  RTEQKCQRADLDSATRSTVSSASLAFSASLHLFSSLPRPDTSWL----DLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHLKNSDPQEAEVEDKDDSLMS

Query:  NPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKLI
        NP +  W+N DGLL +WLLGI   + L MI G D+A  +W SLEEQLL  T E E  L  +L  L KG L  ++Y+ KFK +CD L+
Subjt:  NPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKLI

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]2.8e-2557.39Show/hide
Query:  IRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLT
        IR+ G+E HL    P   E + K+          TW+N DGLLTSWLLGI  EDVL ++EGT++A  VW SLEE LLT+TKENEIHLN+ALLTL KG L+
Subjt:  IRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLT

Query:  LNKYIMKFKKLCDKL
        +++YI KFK LCD+L
Subjt:  LNKYIMKFKKLCDKL

XP_024041750.1 uncharacterized protein LOC112098966 [Citrus clementina]2.4e-1646.6Show/hide
Query:  SDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLC
        S+  + ++  KD+ ++ NP   +W + DGLL SWLLG+  E+VL+   G ++A H+W SLE+QLL VTKE E++L   +LTL K  LTL +Y  +FK LC
Subjt:  SDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLC

Query:  DKL
        D L
Subjt:  DKL

TrEMBL top hitse value%identityAlignment
A0A2K3PEI3 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-1543.48Show/hide
Query:  IRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLT
        IRS G+  HL   +  E EV+        NP ++ W+  DGLL SWLLG   E+VL +I+G D+A+ +W S+EEQLL  T E    L   L+T+ KG  T
Subjt:  IRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLT

Query:  LNKYIMKFKKLCDKL
        L++Y+ +FK +CD L
Subjt:  LNKYIMKFKKLCDKL

A0A2K3PNP5 Copia-like polyprotein (Fragment)8.1e-1841.96Show/hide
Query:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL
        +S + L LS + F +  +  +P     IRS G+E H+  N+   + E+ D   +  +NP    W   DGLLTSWLLG   E+ L+MI G D+A+++W SL
Subjt:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL

Query:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL
         EQLL  T++ E  L  +L  L+KG L+L++YI KFK+LC+KL
Subjt:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL

A0A2Z6P7T0 Reverse transcriptase Ty1/copia-type domain-containing protein1.2e-1841.26Show/hide
Query:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL
        +S + + LS + F +  +  +P     IRS G+E H+  ++   + E+ D   + + NP    W+  DGLLTSWLLG   E+ ++MI G D+AH++W SL
Subjt:  TSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHL-KNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISL

Query:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL
         EQLL  T++ E  L  +L  L+KG L+L++YI KFK+LCDKL
Subjt:  EEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKL

A0A6J1DMG5 uncharacterized protein LOC1110213791.4e-2557.39Show/hide
Query:  IRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLT
        IR+ G+E HL    P   E + K+          TW+N DGLLTSWLLGI  EDVL ++EGT++A  VW SLEE LLT+TKENEIHLN+ALLTL KG L+
Subjt:  IRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLT

Query:  LNKYIMKFKKLCDKL
        +++YI KFK LCD+L
Subjt:  LNKYIMKFKKLCDKL

A0A6P3ZY86 probable leucine-rich repeat receptor-like protein kinase At1g357101.2e-1637.43Show/hide
Query:  RTEQKCQRADLDSATRSTVSSASLAFSASLHLFSSLPRPDTSWL----DLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHLKNSDPQEAEVEDKDDSLMS
        R EQ     DL+   +  + S S+ F   +  F SL   D S      +L L L   ++    P+      IRS GI  HL +  P  A++ +K+     
Subjt:  RTEQKCQRADLDSATRSTVSSASLAFSASLHLFSSLPRPDTSWL----DLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHLKNSDPQEAEVEDKDDSLMS

Query:  NPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKLI
        NP +  W+N DGLL +WLLGI   + L MI G D+A  +W SLEEQLL  T E E  L  +L  L KG L  ++Y+ KFK +CD L+
Subjt:  NPLHTTWLNTDGLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTACGGACGGAACAAAAATGCCAGCGTGCCGATCTTGACAGCGCCACACGTAGCACTGTCTCCTCAGCCTCCCTGGCCTTCAGCGCTTCGCTTCACCTATTTTC
ATCCCTGCCTCGTCCTGATACGTCTTGGCTCGATCTCAACTTGTCTCTAGCTCGTTTTGACGTCGATTTGACTCCACCAATCCCAACCGACAGTACCTCAATTAGAAGCC
CAGGGATTGAAGACCATTTGAAAAATTCAGATCCACAGGAGGCTGAAGTTGAAGACAAAGATGACAGCCTCATGTCAAATCCCCTTCACACCACCTGGCTCAATACTGAT
GGACTTTTAACTTCTTGGTTATTAGGCATCAATTTAGAGGATGTGCTGGCCATGATAGAAGGAACTGATAGTGCTCATCATGTGTGGATCTCTCTTGAAGAACAACTTCT
TACTGTGACAAAAGAAAATGAAATTCATCTCAATAAAGCACTCTTGACCTTGACGAAAGGTCGCCTCACTCTTAATAAATACATCATGAAATTCAAAAAGCTATGTGACA
AACTTATCCTACCTACAGTCAATTCGTGCTTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTACGGACGGAACAAAAATGCCAGCGTGCCGATCTTGACAGCGCCACACGTAGCACTGTCTCCTCAGCCTCCCTGGCCTTCAGCGCTTCGCTTCACCTATTTTC
ATCCCTGCCTCGTCCTGATACGTCTTGGCTCGATCTCAACTTGTCTCTAGCTCGTTTTGACGTCGATTTGACTCCACCAATCCCAACCGACAGTACCTCAATTAGAAGCC
CAGGGATTGAAGACCATTTGAAAAATTCAGATCCACAGGAGGCTGAAGTTGAAGACAAAGATGACAGCCTCATGTCAAATCCCCTTCACACCACCTGGCTCAATACTGAT
GGACTTTTAACTTCTTGGTTATTAGGCATCAATTTAGAGGATGTGCTGGCCATGATAGAAGGAACTGATAGTGCTCATCATGTGTGGATCTCTCTTGAAGAACAACTTCT
TACTGTGACAAAAGAAAATGAAATTCATCTCAATAAAGCACTCTTGACCTTGACGAAAGGTCGCCTCACTCTTAATAAATACATCATGAAATTCAAAAAGCTATGTGACA
AACTTATCCTACCTACAGTCAATTCGTGCTTGCTTTGA
Protein sequenceShow/hide protein sequence
MELRTEQKCQRADLDSATRSTVSSASLAFSASLHLFSSLPRPDTSWLDLNLSLARFDVDLTPPIPTDSTSIRSPGIEDHLKNSDPQEAEVEDKDDSLMSNPLHTTWLNTD
GLLTSWLLGINLEDVLAMIEGTDSAHHVWISLEEQLLTVTKENEIHLNKALLTLTKGRLTLNKYIMKFKKLCDKLILPTVNSCLL