CuGenDBv2

Gene ID	Moc09g31790
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:24006096..24007106
RNA-Seq Expression	Moc09g31790
Synteny	Moc09g31790
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

RVW22327.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.8e-143

75.3

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+MM LKYQDGTPM DHLNTFQGIINQL GM IKFE+E+QGLWLLGTLPDSWETF++SLSNSAP+G+++MD+VK+ VLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQGSSSQS VLV E+R RSKS+GP  RDRSKSK+ + +NVEC++C +KGHIKKYCRQLKR+ K  K KEKKND+G + D+VA  T DFLI++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+N A Q+++WVIDSG SIHAT R+DFF SYTSGDFG VRMGND SAKAIG+GDV LET NGT L LKNVKHIP+IRMNLISTGKLDDEGFCNTF + +
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLTRGSM++AKG K +SLYLMQA  IDS+IN VDD
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

RVW62457.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.3e-142

74.7

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LY  KTGNNKLF IK+MM L YQDGTPM DHLNTFQGIINQL GM IKFE+E+QGLWLLGTLPDSWETF++SLSNSAP+G+++MD+VK+ VLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQGSSSQS VLVTE+R RSKS+GP  RDRSKSK+ + +NVEC++C +KGHIKKYCRQLKR+ K  K KEKKND+G + D+VA  T DFLI++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+N A Q+++WVIDSG SIHAT R+DFF SYTSGDFG VRMGND SAKAIG+GD+ LET NGT L LKNVKHIP+IRMNLISTGKLDDEGFCNTF + +
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLTRGSM++AKG K +SLYLMQA  IDS+IN+VDD
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

RVW88205.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.9e-142

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+MM LKYQDGTPM DHLNTFQGIINQL GM IKFE+E+QGLWLLGTLPDSWETF++SLSNSAP+G+++MD+VK+ VLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQGSSSQS VLV E+R RSKS+GP  RDRSKSK+ + +NVEC++C +KGHIKKYCRQLKR+ K  K KEKKND+G + D+VA  T DFLI++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+N A Q+++WVIDSG SIHAT R+DFF SYTSGDFG V MGND SAKAIG+GDV LET NGT L LKNVKHIP+IRMNLISTGKLDDEGFCNTF + +
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLTRGSM++AKG K +SLYLMQA  IDS+IN VDD
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

TXG57032.1 hypothetical protein EZV62_018345 [Acer yangbiense]

2.9e-142

74.11

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+M+ LKY+DGTP+ DHLN +QGI+NQL GM IKFEDE+QGLWLLGTLPDSWETF++S+ NSAPNGV++MD+ K+SVLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQG SSQSEVLVTE+R RSKS+GP  RDRSKSKS + +NVECYHCG KGHIKKYCRQLKR++KN+KGKEKK DD ND DRV+A T+DFL+++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+NLA  +++WVIDSG SIHAT +RDFFASYTSGDFG V+MGN+  AKA+G+GDV LET NG  L+LKNVKHIP+IR+NLIS GKLDDEGFCNTF +G 
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLT+GSMIVA+G+KC+SLY MQA   D  INIVD+
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

TXG70578.1 hypothetical protein EZV62_005513 [Acer yangbiense]

3.7e-142

74.11

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+M+ LKY+DGTP+ DHLN +QGI+NQL GM IKFEDE+QGLWLLGTLPDSWETF++S+ NSAPNGV++MD+ K+SVLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQG SSQSEVLVTE+R RSKS+GP  RDRSKSKS + +NVECYHCG KGHIKKYCRQLKR++KN+KGKEKK DD ND DRV+A T+DFL+++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+NLA  +++WVIDSG SIHAT RRDFFASYTSGDFG V+MGN+  AKA+G+GDV LET NG  L+LKNVKHIP+IR+NLIS GKLDDEGFCNTF +G 
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLT+GSMIVA+G+KC+SLY MQA   D  IN VD+
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

TrEMBL top hits

e value

%identity

Alignment

A0A438CGI4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-143

75.3

Show/hide

Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+MM LKYQDGTPM DHLNTFQGIINQL GM IKFE+E+QGLWLLGTLPDSWETF++SLSNSAP+G+++MD+VK+ VLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQGSSSQS VLV E+R RSKS+GP  RDRSKSK+ + +NVEC++C +KGHIKKYCRQLKR+ K  K KEKKND+G + D+VA  T DFLI++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+N A Q+++WVIDSG SIHAT R+DFF SYTSGDFG VRMGND SAKAIG+GDV LET NGT L LKNVKHIP+IRMNLISTGKLDDEGFCNTF + +
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLTRGSM++AKG K +SLYLMQA  IDS+IN VDD
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

A0A438FR91 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.2e-143

74.7

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LY  KTGNNKLF IK+MM L YQDGTPM DHLNTFQGIINQL GM IKFE+E+QGLWLLGTLPDSWETF++SLSNSAP+G+++MD+VK+ VLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQGSSSQS VLVTE+R RSKS+GP  RDRSKSK+ + +NVEC++C +KGHIKKYCRQLKR+ K  K KEKKND+G + D+VA  T DFLI++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+N A Q+++WVIDSG SIHAT R+DFF SYTSGDFG VRMGND SAKAIG+GD+ LET NGT L LKNVKHIP+IRMNLISTGKLDDEGFCNTF + +
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLTRGSM++AKG K +SLYLMQA  IDS+IN+VDD
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

A0A438HUT4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-142

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+MM LKYQDGTPM DHLNTFQGIINQL GM IKFE+E+QGLWLLGTLPDSWETF++SLSNSAP+G+++MD+VK+ VLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQGSSSQS VLV E+R RSKS+GP  RDRSKSK+ + +NVEC++C +KGHIKKYCRQLKR+ K  K KEKKND+G + D+VA  T DFLI++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+N A Q+++WVIDSG SIHAT R+DFF SYTSGDFG V MGND SAKAIG+GDV LET NGT L LKNVKHIP+IRMNLISTGKLDDEGFCNTF + +
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLTRGSM++AKG K +SLYLMQA  IDS+IN VDD
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

A0A5C7HL28 CCHC-type domain-containing protein

1.4e-142

74.11

Show/hide

Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+M+ LKY+DGTP+ DHLN +QGI+NQL GM IKFEDE+QGLWLLGTLPDSWETF++S+ NSAPNGV++MD+ K+SVLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQG SSQSEVLVTE+R RSKS+GP  RDRSKSKS + +NVECYHCG KGHIKKYCRQLKR++KN+KGKEKK DD ND DRV+A T+DFL+++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+NLA  +++WVIDSG SIHAT +RDFFASYTSGDFG V+MGN+  AKA+G+GDV LET NG  L+LKNVKHIP+IR+NLIS GKLDDEGFCNTF +G 
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLT+GSMIVA+G+KC+SLY MQA   D  INIVD+
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

A0A5C7IN93 CCHC-type domain-containing protein

1.8e-142

74.11

Show/hide

Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +WNKLE LYA KTGNNKLF IK+M+ LKY+DGTP+ DHLN +QGI+NQL GM IKFEDE+QGLWLLGTLPDSWETF++S+ NSAPNGV++MD+ K+SVLN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG
        EEMRRKSQG SSQSEVLVTE+R RSKS+GP  RDRSKSKS + +NVECYHCG KGHIKKYCRQLKR++KN+KGKEKK DD ND DRV+A T+DFL+++D 
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDG

Query:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK
        DV+NLA  +++WVIDSG SIHAT RRDFFASYTSGDFG V+MGN+  AKA+G+GDV LET NG  L+LKNVKHIP+IR+NLIS GKLDDEGFCNTF +G 
Subjt:  DVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGK

Query:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
        WKLT+GSMIVA+G+KC+SLY MQA   D  IN VD+
Subjt:  WKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.6e-10

22.88

Show/hide

Query:  LESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLNEEMR
        L+++Y  K+  ++L   K+++ LK      +L H + F  +I++L+    K E+  +   LL TLP  ++   +++   +    +++  VKN +L++E++
Subjt:  LESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLNEEMR

Query:  RKSQGSSSQSEV---LVTERRWRSKS---KGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILF
         K+  + +  +V   +V       K+   K    + +   K      V+C+HCG +GHIKK C   KR   N   K K+N+      +V  AT   +   
Subjt:  RKSQGSSSQSEV---LVTERRWRSKS---KGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILF

Query:  DGDVINLAIQQS-NWVIDSGTSIHATFRRDFFASYTSG----DFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFC
          +V N ++  +  +V+DSG S H       +               + G    A   GI    +  +N   + L++V        NL+S  +L + G  
Subjt:  DGDVINLAIQQS-NWVIDSGTSIHATFRRDFFASYTSG----DFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFC

Query:  NTFYNGKWKLTRGSMIVAK
          F      +++  ++V K
Subjt:  NTFYNGKWKLTRGSMIVAK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.6e-57

38.37

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Query:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN
        +W +LESLY  KT  NKL+  KQ+  L   +GT  L HLN F G+I QL  + +K E+E + + LL +LP S++   +++ +     +   D+    +LN
Subjt:  MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLN

Query:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRS----KSKSGQLSNV-ECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFL
        E+MR+K +   +Q + L+TE R RS  +  N   RS    KSK+   S V  CY+C   GH K+ C   ++      G  +KNDD   A        D +
Subjt:  EEMRRKSQGSSSQSEVLVTERRWRSKSKGPNGRDRS----KSKSGQLSNV-ECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFL

Query:  ILF---DGDVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGF
        +LF   + + ++L+  +S WV+D+  S HAT  RD F  Y +GDFG V+MGN   +K  GIGD+ ++T  G TLVLK+V+H+P++RMNLIS   LD +G+
Subjt:  ILF---DGDVINLAIQQSNWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGF

Query:  CNTFYNGKWKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD
         + F N KW+LT+GS+++AKG    +LY   A      +N   D
Subjt:  CNTFYNGKWKLTRGSMIVAKGEKCTSLYLMQAMFIDSAINIVDD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTGGAACAAGCTTGAGTCGTTATATGCCCCGAAAACTGGCAATAATAAATTGTTTTTTATAAAACAAATGATGGTTTTGAAGTATCAAGATGGAACACCTATG
TTAGATCACTTGAATACATTCCAAGGTATCATTAATCAGCTTATTGGAATGAAAATCAAGTTTGAAGATGAGATACAAGGATTATGGCTTCTTGGTACATTACCG
GACTCGTGGGAGACTTTCAAAAGTTCGTTATCGAACTCAGCCCCAAATGGAGTAATAAGTATGGACATGGTGAAAAACAGTGTTTTAAATGAAGAGATGAGAAGA
AAATCACAGGGCTCTTCATCACAATCAGAGGTTCTTGTTACTGAAAGAAGGTGGAGGAGTAAGAGCAAAGGTCCAAATGGTAGAGATAGAAGCAAAAGTAAGAGC
GGTCAGTTATCCAATGTTGAGTGTTATCATTGTGGCATGAAAGGGCATATAAAGAAGTATTGTCGACAACTGAAGAGAGAAAATAAAAATGATAAAGGTAAGGAA
AAGAAAAACGATGATGGTAATGACGCAGATAGAGTTGCTGCAGCTACTGAGGATTTCCTTATCTTATTTGATGGTGATGTTATTAATTTAGCTATACAGCAGAGC
AATTGGGTGATTGATAGTGGCACATCAATTCATGCTACATTCAGGAGGGATTTCTTTGCATCCTACACATCTGGTGATTTCGGTTGTGTTAGGATGGGTAATGAT
AGATCAGCAAAAGCCATTGGTATTGGTGATGTACACTTGGAGACCAAGAATGGTACTACGCTGGTTTTGAAGAATGTGAAACATATCCCTAATATTCGCATGAAT
TTAATTTCCACAGGTAAGCTTGATGACGAAGGTTTCTGCAATACCTTCTACAATGGCAAATGGAAGCTTACTAGAGGCTCAATGATTGTAGCTAAGGGAGAGAAG
TGTACCTCACTGTATTTGATGCAAGCAATGTTTATTGATTCTGCAATAAATATAGTAGATGATTGA

mRNA sequence

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Protein sequence

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MWNKLESLYAPKTGNNKLFFIKQMMVLKYQDGTPMLDHLNTFQGIINQLIGMKIKFEDEIQGLWLLGTLPDSWETFKSSLSNSAPNGVISMDMVKNSVLNEEMRR
KSQGSSSQSEVLVTERRWRSKSKGPNGRDRSKSKSGQLSNVECYHCGMKGHIKKYCRQLKRENKNDKGKEKKNDDGNDADRVAAATEDFLILFDGDVINLAIQQS
NWVIDSGTSIHATFRRDFFASYTSGDFGCVRMGNDRSAKAIGIGDVHLETKNGTTLVLKNVKHIPNIRMNLISTGKLDDEGFCNTFYNGKWKLTRGSMIVAKGEK
CTSLYLMQAMFIDSAINIVDD

Moc09g31790 (gene) of Bitter gourd (OHB3-1) v2 genome