; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g32110 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g32110
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr9:24277313..24283108
RNA-Seq ExpressionMoc09g32110
SyntenyMoc09g32110
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049793.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-4361.39Show/hide
Query:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII
        RLKDKL+SQ+ NS+ ANLVESS  ++DR K +     K+  ++    Q K TGG+I+K KLV YVCGK  HKSYQC QRK R +Q  TPQA L E D  I
Subjt:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII

Query:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
         A +VEANL++NK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGNS T E +GK
Subjt:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.0e-4358.29Show/hide
Query:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK
        LP+L      +E+N   RLKDKL+SQ+ NSV ANLVESS  ++DR K +     K+  ++    Q K TGG+I+K KLV YVCGK  HKSYQC QRK R 
Subjt:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK

Query:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
         Q  TPQA L E D  I A +VEANL++NK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGNS T   +GK
Subjt:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.0e-4358.29Show/hide
Query:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK
        LP+L      +E+N   RLKDKL+SQ+ NSV ANLVESS  ++DR K +     K+  ++    Q K TGG+I+K KLV YVCGK  HKSYQC QRK R 
Subjt:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK

Query:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
         Q  TPQA L E D  I A +VEANL++NK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGNS T   +GK
Subjt:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]5.2e-5685.38Show/hide
Query:  FKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCS
        FKNKGKTI +DRA+KNKGLQPKNTGGRIEK+KLV YVC KP HKSYQCTQ+KDR DQ  TPQA LTETDDIIT VVVE NLV+NKSDWILDTGASRHFCS
Subjt:  FKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCS

Query:  NRDLFHDFQDSADGECVFMGNSVTLEYLGK
        NRDLFHDFQDSADGECVFMGNS T+  LGK
Subjt:  NRDLFHDFQDSADGECVFMGNSVTLEYLGK

XP_022156023.1 uncharacterized protein LOC111022991 [Momordica charantia]8.2e-6280.38Show/hide
Query:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII
        RLKDKLSSQS NSVK NLVESSSASKDRFK KGK IA+DRA+KNKGL+PKN GGR+EK KLV YVC KP HKSYQCTQ+KDRKDQ   PQA + ET +II
Subjt:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII

Query:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
          VVVEANLV+NKS+WILDTGASRHFC NRDLFHDFQDSA+GECVFMGN   LEYLGK
Subjt:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

TrEMBL top hitse value%identityAlignment
A0A5A7U1P8 Ty1-copia retrotransposon protein1.4e-4361.39Show/hide
Query:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII
        RLKDKL+SQ+ NS+ ANLVESS  ++DR K +     K+  ++    Q K TGG+I+K KLV YVCGK  HKSYQC QRK R +Q  TPQA L E D  I
Subjt:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII

Query:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
         A +VEANL++NK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGNS T E +GK
Subjt:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

A0A5D3C5T2 Ty1-copia retrotransposon protein2.4e-4358.29Show/hide
Query:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK
        LP+L      +E+N   RLKDKL+SQ+ NSV ANLVESS  ++DR K +     K+  ++    Q K TGG+I+K KLV YVCGK  HKSYQC QRK R 
Subjt:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK

Query:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
         Q  TPQA L E D  I A +VEANL++NK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGNS T   +GK
Subjt:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

A0A5D3DJE2 Ty1-copia retrotransposon protein2.4e-4358.29Show/hide
Query:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK
        LP+L      +E+N   RLKDKL+SQ+ NSV ANLVESS  ++DR K +     K+  ++    Q K TGG+I+K KLV YVCGK  HKSYQC QRK R 
Subjt:  LPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRK

Query:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
         Q  TPQA L E D  I A +VEANL++NK+DWILDTGASRHFC+NR+L HD++D+ADGECVFMGNS T   +GK
Subjt:  DQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

A0A6J1DHJ4 uncharacterized protein LOC1110211472.5e-5685.38Show/hide
Query:  FKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCS
        FKNKGKTI +DRA+KNKGLQPKNTGGRIEK+KLV YVC KP HKSYQCTQ+KDR DQ  TPQA LTETDDIIT VVVE NLV+NKSDWILDTGASRHFCS
Subjt:  FKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCS

Query:  NRDLFHDFQDSADGECVFMGNSVTLEYLGK
        NRDLFHDFQDSADGECVFMGNS T+  LGK
Subjt:  NRDLFHDFQDSADGECVFMGNSVTLEYLGK

A0A6J1DPG7 uncharacterized protein LOC1110229914.0e-6280.38Show/hide
Query:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII
        RLKDKLSSQS NSVK NLVESSSASKDRFK KGK IA+DRA+KNKGL+PKN GGR+EK KLV YVC KP HKSYQCTQ+KDRKDQ   PQA + ET +II
Subjt:  RLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQRKDRKDQMTTPQAKLTETDDII

Query:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK
          VVVEANLV+NKS+WILDTGASRHFC NRDLFHDFQDSA+GECVFMGN   LEYLGK
Subjt:  TAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTATCCGATCTGGGAAGGTCCTGCCGGACTTGTCAAAATTGGAACCACTCGACGAATCCAACTATCGCCAACGGCTAAAGGATAAGCTCTCTTCTCAA
TCCTCAAATTCAGTTAAAGCTAATTTGGTTGAATCTTCTAGTGCTTCCAAAGACAGGTTCAAAAATAAAGGGAAGACAATTGCAAAGGATAGAGCTGAAAAGAAC
AAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATTGAGAAAACTAAACTGGTCTACTATGTCTGTGGAAAACCCAGGCACAAATCCTATCAGTGCACTCAGAGG
AAAGATAGGAAAGATCAAATGACTACTCCACAAGCCAAGCTTACAGAGACAGATGACATCATTACCGCTGTGGTTGTGGAAGCGAATCTAGTAGATAACAAATCC
GACTGGATTCTTGACACAGGAGCATCCAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACTTCCAGGACTCTGCCGACGGTGAATGTGTTTTCATGGGAAAC
TCTGTCACACTGGAGTACTTGGGAAAGAGAATTTTTGAGTGGTTTATCTATGATAGACTTGATGAAGTGACAAACGTGACTGTGAAGAGGGACACTGTTTATGCA
GAGAATTTGCACAATGTCAAACCTCAGTCAAGTTCAAACTCGGTCCTAGCTCCAACTTGGAATGCAACGGGAAAACCTGCACAAGAGGGCAAAATCTTCGACGCT
CAAGTCAGTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTATCCGATCTGGGAAGGTCCTGCCGGACTTGTCAAAATTGGAACCACTCGACGAATCCAACTATCGCCAACGGCTAAAGGATAAGCTCTCTTCTCAA
TCCTCAAATTCAGTTAAAGCTAATTTGGTTGAATCTTCTAGTGCTTCCAAAGACAGGTTCAAAAATAAAGGGAAGACAATTGCAAAGGATAGAGCTGAAAAGAAC
AAAGGTCTCCAACCTAAAAATACTGGTGGAAGAATTGAGAAAACTAAACTGGTCTACTATGTCTGTGGAAAACCCAGGCACAAATCCTATCAGTGCACTCAGAGG
AAAGATAGGAAAGATCAAATGACTACTCCACAAGCCAAGCTTACAGAGACAGATGACATCATTACCGCTGTGGTTGTGGAAGCGAATCTAGTAGATAACAAATCC
GACTGGATTCTTGACACAGGAGCATCCAGACATTTCTGCTCGAACCGTGACCTCTTCCATGACTTCCAGGACTCTGCCGACGGTGAATGTGTTTTCATGGGAAAC
TCTGTCACACTGGAGTACTTGGGAAAGAGAATTTTTGAGTGGTTTATCTATGATAGACTTGATGAAGTGACAAACGTGACTGTGAAGAGGGACACTGTTTATGCA
GAGAATTTGCACAATGTCAAACCTCAGTCAAGTTCAAACTCGGTCCTAGCTCCAACTTGGAATGCAACGGGAAAACCTGCACAAGAGGGCAAAATCTTCGACGCT
CAAGTCAGTAAGTAG
Protein sequenceShow/hide protein sequence
MATIRSGKVLPDLSKLEPLDESNYRQRLKDKLSSQSSNSVKANLVESSSASKDRFKNKGKTIAKDRAEKNKGLQPKNTGGRIEKTKLVYYVCGKPRHKSYQCTQR
KDRKDQMTTPQAKLTETDDIITAVVVEANLVDNKSDWILDTGASRHFCSNRDLFHDFQDSADGECVFMGNSVTLEYLGKRIFEWFIYDRLDEVTNVTVKRDTVYA
ENLHNVKPQSSSNSVLAPTWNATGKPAQEGKIFDAQVSK