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Moc09g33860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g33860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr9:25785198..25790960
RNA-Seq ExpressionMoc09g33860
SyntenyMoc09g33860
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74381.1 hypothetical protein VITISV_007944 [Vitis vinifera]3.4e-3253.79Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SLVSIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]4.4e-3253.79Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SLVSIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.4e-3253.79Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SLVSIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

RVX14187.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]9.8e-3253.1Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SL+SIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]4.7e-5073.29Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        LT+Q+FHQC+SL+S+KLNSSNYLLWKSQVLPLIRTLGLE HL ++AP V +   +EG+     Q+ TW NNDGLLTSWLLGII EDVL LL     AKEV
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLDK
        W SLE+LLLTMTKENEIHLNEALLTLKKGSLS+DEYIRKFK+  D+
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLDK

TrEMBL top hitse value%identityAlignment
A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE12.1e-3253.79Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SLVSIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-3253.79Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SLVSIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

A0A438JZ09 Retrovirus-related Pol polyprotein from transposon RE14.8e-3253.1Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SL+SIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

A0A6J1DMG5 uncharacterized protein LOC1110213792.3e-5073.29Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        LT+Q+FHQC+SL+S+KLNSSNYLLWKSQVLPLIRTLGLE HL ++AP V +   +EG+     Q+ TW NNDGLLTSWLLGII EDVL LL     AKEV
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLDK
        W SLE+LLLTMTKENEIHLNEALLTLKKGSLS+DEYIRKFK+  D+
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLDK

A5BC00 Uncharacterized protein1.6e-3253.79Show/hide
Query:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV
        L+IQ FHQC+SLVSIKLN SN LLW+SQVLPL+R+LGL  HLS++     +++  E K  ++  + TW++NDGLLTSWLLG++ E+V+ LL     A +V
Subjt:  LTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALL-----AKEV

Query:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD
        W SL + LL MTKE E+ L   L  +KKG+ SLDEY+R+FK   D
Subjt:  WRSLEDLLLTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACTGACCATACAGACTTTCCACCAGTGTGCTAGCCTAGTATCCATCAAATTGAATTCTTCAAACTATCTATTGTGGAAATCGCAAGTTTTACCGCTGATC
AGAACACTTGGACTTGAACAACACCTCTCAAAAGATGCACCTGAAGTGGGAAAATCAGTAGATGAGGAAGGGAAACCAGTGAATAATCCTCAACTCAACACATGG
ACCAACAATGATGGCCTTCTCACCTCTTGGCTATTGGGAATCATTGGTGAAGATGTGTTGGCATTACTAGCAAAGGAGGTATGGCGTTCTCTTGAAGATCTACTC
TTAACCATGACTAAAGAGAATGAAATACACTTGAATGAAGCCTTGCTCACTCTAAAGAAAGGATCTTTATCTCTAGATGAATATATAAGGAAATTTAAGAGCACT
CTAGACAAGGAAGAAGGATCACTTAGCAAGGACATTCTTGGCATTCATACCAATAGAACAAGAGCCAATGTGTGGGCAGATACAATGGCTTTCGACCAGGCTGCA
AAATCTTACTCAGAAGGCACACAACAGGCAGACAACGAGAATGAATTAGGTGTTACTGATGCTGGAGTTAATACACCTCCCTTAGAACCATTGCAAATTGAACCA
CACAATGTGCCATCAGAGACAGCAGCCACCACCAGCTTGGACTTCTCTACTACTCAAGAAGCAGATCCTACATTGACCAACTCAGAAATTGATACAGATTTGCTT
TCTTCAACTCTAAATACTACTCCCCCTTGCTCTAACTTAATAAATTGTGGGTCTCTCCCTGATATCAGCAATAGTATTTACATTGAACTTCCCTTCTCTGATGCA
GAAAATACTCACACACCTACAGATCCACCAACTCACTCACAAGATAACAACACTCACAACATGGTCACAAGAGGGAAACTGGCTAAAAATCCTCAACTTGATCCA
GTCCTATCCAAGGAAGCTCATCACCTGAAGATCTTTAAAGTCTTCGGCTTTAAGCTTGTTAAAGAATCTTTGAAGTCTTCAATGTTGAGCTTGTTGAAGATCTTC
AATTTGTTGATGAAGTTCTTAGGCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACTGACCATACAGACTTTCCACCAGTGTGCTAGCCTAGTATCCATCAAATTGAATTCTTCAAACTATCTATTGTGGAAATCGCAAGTTTTACCGCTGATC
AGAACACTTGGACTTGAACAACACCTCTCAAAAGATGCACCTGAAGTGGGAAAATCAGTAGATGAGGAAGGGAAACCAGTGAATAATCCTCAACTCAACACATGG
ACCAACAATGATGGCCTTCTCACCTCTTGGCTATTGGGAATCATTGGTGAAGATGTGTTGGCATTACTAGCAAAGGAGGTATGGCGTTCTCTTGAAGATCTACTC
TTAACCATGACTAAAGAGAATGAAATACACTTGAATGAAGCCTTGCTCACTCTAAAGAAAGGATCTTTATCTCTAGATGAATATATAAGGAAATTTAAGAGCACT
CTAGACAAGGAAGAAGGATCACTTAGCAAGGACATTCTTGGCATTCATACCAATAGAACAAGAGCCAATGTGTGGGCAGATACAATGGCTTTCGACCAGGCTGCA
AAATCTTACTCAGAAGGCACACAACAGGCAGACAACGAGAATGAATTAGGTGTTACTGATGCTGGAGTTAATACACCTCCCTTAGAACCATTGCAAATTGAACCA
CACAATGTGCCATCAGAGACAGCAGCCACCACCAGCTTGGACTTCTCTACTACTCAAGAAGCAGATCCTACATTGACCAACTCAGAAATTGATACAGATTTGCTT
TCTTCAACTCTAAATACTACTCCCCCTTGCTCTAACTTAATAAATTGTGGGTCTCTCCCTGATATCAGCAATAGTATTTACATTGAACTTCCCTTCTCTGATGCA
GAAAATACTCACACACCTACAGATCCACCAACTCACTCACAAGATAACAACACTCACAACATGGTCACAAGAGGGAAACTGGCTAAAAATCCTCAACTTGATCCA
GTCCTATCCAAGGAAGCTCATCACCTGAAGATCTTTAAAGTCTTCGGCTTTAAGCTTGTTAAAGAATCTTTGAAGTCTTCAATGTTGAGCTTGTTGAAGATCTTC
AATTTGTTGATGAAGTTCTTAGGCTTGTAG
Protein sequenceShow/hide protein sequence
MPLTIQTFHQCASLVSIKLNSSNYLLWKSQVLPLIRTLGLEQHLSKDAPEVGKSVDEEGKPVNNPQLNTWTNNDGLLTSWLLGIIGEDVLALLAKEVWRSLEDLL
LTMTKENEIHLNEALLTLKKGSLSLDEYIRKFKSTLDKEEGSLSKDILGIHTNRTRANVWADTMAFDQAAKSYSEGTQQADNENELGVTDAGVNTPPLEPLQIEP
HNVPSETAATTSLDFSTTQEADPTLTNSEIDTDLLSSTLNTTPPCSNLINCGSLPDISNSIYIELPFSDAENTHTPTDPPTHSQDNNTHNMVTRGKLAKNPQLDP
VLSKEAHHLKIFKVFGFKLVKESLKSSMLSLLKIFNLLMKFLGL