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Moc09g35500 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g35500
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSigma factor binding protein 1
Genome locationchr9:27219447..27219905
RNA-Seq ExpressionMoc09g35500
SyntenyMoc09g35500
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4569.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE ++YQSS+APP+DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Subjt:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL

XP_022139181.1 uncharacterized protein LOC111010149 [Momordica charantia]3.6e-76100Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
        LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Subjt:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL

XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]3.3e-4569.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE ++YQSS+APP+DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Subjt:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL

XP_022966872.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]1.2e-4469.03Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE ++YQSS+APP+DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Subjt:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]4.3e-4569.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE ++YQSS+APP+DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Subjt:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL

TrEMBL top hitse value%identityAlignment
A0A6J1CBX0 uncharacterized protein LOC1110101491.7e-76100Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
        LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Subjt:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like1.6e-4569.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE ++YQSS+APP+DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Subjt:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like2.1e-3469.57Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIG+K  K  R+KKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI    AADRN      S+AFLD+Q+L   DD+ IDRD  HR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIE-SSYQSSIAPP-DDLILQNFDANFADMFHGF
        LV+G IE ++YQS +APP DD +LQNFDA+F +M HGF
Subjt:  LVSGNIE-SSYQSSIAPP-DDLILQNFDANFADMFHGF

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like6.0e-4569.03Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE ++YQSS+APP+DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Subjt:  RLVSGNIE-SSYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL

D1MWZ4 Sigma factor binding protein 13.7e-3463.29Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        M+V G+KQAK R  K +AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL  A+AA+DRN LQ S+SA F D+QLL   DDD +       
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIE-SSYQSSIA---PPDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL
         V+G +E ++Y+SS+A   PPDDL +L N DA+F  MFHGF  DS T Q +MPGL  L
Subjt:  LVSGNIE-SSYQSSIA---PPDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic2.9e-0442.11Show/hide
Query:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA
        + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I + ++ D N   P+ + A
Subjt:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein7.9e-0557.5Show/hide
Query:  RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        R+S  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 12.1e-0542.11Show/hide
Query:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA
        + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I + ++ D N   P+ + A
Subjt:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTC
CAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCAT
CGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTAT
CAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCC
GGGTTTGGCTCTACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTC
CAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCAT
CGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTAT
CAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCC
GGGTTTGGCTCTACTGTAA
Protein sequenceShow/hide protein sequence
MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSY
QSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL