; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g37620 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g37620
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionVQ domain-containing protein
Genome locationchr9:28932152..28932643
RNA-Seq ExpressionMoc09g37620
SyntenyMoc09g37620
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-3055.42Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE-VNC
        MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALVQRLTG +   PP+AD +  +N     NDSSSV+TEE  NC
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE-VNC

Query:  GDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
                                  PLFTP                L NSLSPSFMEFLKGLPEF
Subjt:  GDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]2.1e-2669.16Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC
        MSP KS +INGPRPSPLLIH HSRLIRK P QLRQPLIIYTHSPKIIHT PKDFMALVQRLTG  PPPP   P A  S    N+N DNDSSS +T E + 
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC

Query:  GDHNHHP
         +  + P
Subjt:  GDHNHHP

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]4.5e-3256.44Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQRLTGF PPPP      +RN+N   DNDS+S +T E +    
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
              V E QS      + +DV              T F+SP   +SLSPSFM+FLK LPEF
Subjt:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]2.0e-88100Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
        NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
Subjt:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]6.9e-4164.74Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLT--
        MSP KSC+INGPRPSPLLIHK SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQRLTGF PPPPP   +      S+RN N   DNDSSS LT  
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLT--

Query:  EEVN-CGDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFLKGLPEF
        EE+N CGD     S V +   Q QS+S L          LRY+ D T+ F+SP L NSLSPSFMEFLK LPEF
Subjt:  EEVN-CGDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFLKGLPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein1.7e-3258.68Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC
        MSP KS +INGPRPSPLLIH HSRLIRK P QLRQPLIIYTHSPKIIHT PKDFMALVQRLTG  PPPP   P A  S    N+N DNDSSS +T E + 
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC

Query:  GDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFLKGLPEF
         +   + S +K       SH    DV              T F+SP  L +SLSPSFM+FLK LPEF
Subjt:  GDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFLKGLPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like2.2e-3256.44Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQRLTGF PPPP      +RN+N   DNDS+S +T E +    
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
              V E QS      + +DV              T F+SP   +SLSPSFM+FLK LPEF
Subjt:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

A0A5D3CFH5 VQ motif-containing protein 82.2e-3256.44Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQRLTGF PPPP      +RN+N   DNDS+S +T E +    
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
              V E QS      + +DV              T F+SP   +SLSPSFM+FLK LPEF
Subjt:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic9.5e-89100Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
        NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
Subjt:  NHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

W9RYA3 VQ domain-containing protein9.7e-2541.5Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKP-------PPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGF-----------------------TPPPPP
        MSP K   ING RPSPL I+K S  I KP       PPQ  QP+IIYTHSP+IIHT+P++FMA+VQ LTG                        +    P
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKP-------PPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGF-----------------------TPPPPP

Query:  HADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSHSFLADVPLFTP-------AGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF
           +S  +   + +N+SSSVLT+E+N G   ++          + S+  LAD+PLFTP       A  R+ PDATS  + G  + +SPSF+EF+KGLPE+
Subjt:  HADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSHSFLADVPLFTP-------AGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B3.3e-0642.86Show/hide
Query:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GP+P+PL +   S ++I+KP          PPQ  Q           P+ IYT +P+IIHT P +FM LVQRLTG T
Subjt:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q8LGD5 Protein MKS19.4e-0942.67Show/hide
Query:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +   I GPRPSPL +HK S  I+K             PPP + R+P++IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q9CA36 VQ motif-containing protein 8, chloroplastic1.2e-1640.99Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT
        M P +  +ING RPS L +   S  I+       KP P  R  P+IIY HSPK+IHT+ +DFMALVQRLTG         D+  R N       SSSV+T
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT

Query:  EEVNCGDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP
        EEVN GD N    + ++ ++Q Q    L D+PLFTP+ +    +P    + SP   +S  P
Subjt:  EEVNCGDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP

Q9LS54 VQ motif-containing protein 203.8e-1033.11Show/hide
Query:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN
        P P  L ++K S +I+KPP         + R P+IIYTH+P+IIHT PKDFMALVQ+LTG T     H+D+                          DR 
Subjt:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN

Query:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH
        NN                             ++ D++SSSV+T E N G+H
Subjt:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.4e-0742.86Show/hide
Query:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GP+P+PL +   S ++I+KP          PPQ  Q           P+ IYT +P+IIHT P +FM LVQRLTG T
Subjt:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT

AT1G21326.1 VQ motif-containing protein2.1e-0829.44Show/hide
Query:  KSCDINGPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVN
        +S  I GPRP PL +   S ++I+KP          PPQ  Q           P+IIYT SP+IIHT P +FM LVQRLTG T         S  +++ +
Subjt:  KSCDINGPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVN

Query:  FDNDSSSV---------------LTEEVNCGD----------------HNHHPSYVKEVQSQSQSHSFLADVPLFTPAGL---------RYAPDATSFAS
           D+S++               +TE+ N  +                H HH  + +E Q Q+Q      + P F  AG+           +PD  S   
Subjt:  FDNDSSSV---------------LTEEVNCGD----------------HNHHPSYVKEVQSQSQSHSFLADVPLFTPAGL---------RYAPDATSFAS

Query:  PGLPNSLSPSFMEF
        P  P   S  F +F
Subjt:  PGLPNSLSPSFMEF

AT1G68450.1 VQ motif-containing protein8.7e-1840.99Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT
        M P +  +ING RPS L +   S  I+       KP P  R  P+IIY HSPK+IHT+ +DFMALVQRLTG         D+  R N       SSSV+T
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT

Query:  EEVNCGDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP
        EEVN GD N    + ++ ++Q Q    L D+PLFTP+ +    +P    + SP   +S  P
Subjt:  EEVNCGDHNHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP

AT3G18360.1 VQ motif-containing protein2.7e-1133.11Show/hide
Query:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN
        P P  L ++K S +I+KPP         + R P+IIYTH+P+IIHT PKDFMALVQ+LTG T     H+D+                          DR 
Subjt:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN

Query:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH
        NN                             ++ D++SSSV+T E N G+H
Subjt:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH

AT3G18690.1 MAP kinase substrate 16.7e-1042.67Show/hide
Query:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +   I GPRPSPL +HK S  I+K             PPP + R+P++IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCT
CATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACG
ACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACAACCACCACCCCTCCTACGTTAAGGAAGTC
CAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAA
TTCCTTGTCCCCCTCTTTCATGGAGTTTCTCAAAGGCTTGCCCGAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCT
CATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACG
ACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACAACCACCACCCCTCCTACGTTAAGGAAGTC
CAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAA
TTCCTTGTCCCCCTCTTTCATGGAGTTTCTCAAAGGCTTGCCCGAATTTTAG
Protein sequenceShow/hide protein sequence
MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEV
QSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF