; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g40250 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g40250
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:30782722..30787862
RNA-Seq ExpressionMoc09g40250
SyntenyMoc09g40250
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]9.7e-7790.8Show/hide
Query:  DLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLVA
        DLAAFT WAIWCDRNS AHGSSVSTPALR NWISSYFQNYSQAQENK+ISPQQ+SVPPPSCRWLPP DSAMKVNSDAACRSTSTGLGLIIRDH GVLLVA
Subjt:  DLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLVA

Query:  KSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMK
        KS+FLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLF+MG+E+  + K
Subjt:  KSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMK

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-4444.64Show/hide
Query:  LVNGVTPKDCLFRGDLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGL
        L   + PKD     +LAA T W IW DRNSL HG  VS    +  W++ +  ++SQAQ +      Q++  P    W P    ++K+N+DAACR  ST  
Subjt:  LVNGVTPKDCLFRGDLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGL

Query:  GLIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFC
        G IIRD    L+ A S+ +P PL+PL AEIR ILE LK AA+ ++T L VESD   AI+L++ ++ T G E NW+M+I+++   F  ISF HS R CN  
Subjt:  GLIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFC

Query:  AHSLAKWAI-SASSSCLWQFPFSSRLMDLVKGD
        AH LAKW I S S++  W F F + L+DLV+ D
Subjt:  AHSLAKWAI-SASSSCLWQFPFSSRLMDLVKGD

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.2e-1831.25Show/hide
Query:  LAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQEN--KKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLV
        L   TCWA+W DR++L +   +    ++  WI  Y +       N  K+  P+ N        W PP    +K+N+DAA     +G+G+++R+     +V
Subjt:  LAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQEN--KKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLV

Query:  AKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASS
           V   M   PL A+I  I E L LA      R+VVE+D  EA+ L+       G+ ++W+  IR+ A  F+ I F H  R  N  A+ L +  IS   
Subjt:  AKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASS

Query:  SCLWQFPF
          LW+  F
Subjt:  SCLWQFPF

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]6.0e-1830.39Show/hide
Query:  LAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRS--TSTGLGLIIRDHLGVLLV
        L     WA WC+RN + HG+   +P     W++ Y   YS A E+     ++ SV      W PP  S +KVN D A        G+G ++RD  G ++ 
Subjt:  LAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRS--TSTGLGLIIRDHLGVLLV

Query:  AKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASS
        A S  +P PL PL  E++     L+LA    Y  +++E D    +R + G   +     + I+ ++     F ++   H  R  N  AH LAK+A+S + 
Subjt:  AKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASS

Query:  SCLW
        S +W
Subjt:  SCLW

XP_038722072.1 uncharacterized protein LOC120014227 [Tripterygium wilfordii]1.6e-1831.34Show/hide
Query:  FTC-WAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLVAKSV
        FTC W IW  RN + H +           ++++  +Y +AQ        + S PP   +W PP  S +K+N DAA R +  G+G+I RD  G  + +K++
Subjt:  FTC-WAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLVAKSV

Query:  FLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASSSCLW
         +P PLNPLFAE     EAL  A S +Y  +V+E D    I+ ++ +   + +    +   +++  +   +SF H  RS N+ A +LAK+A+S   S  W
Subjt:  FLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASSSCLW

Query:  QFPFSSRLMDLVKGDSL
             + L  +++ D L
Subjt:  QFPFSSRLMDLVKGDSL

TrEMBL top hitse value%identityAlignment
A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)4.6e-1629.15Show/hide
Query:  WAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRST--STGLGLIIRDHLGVLLVAKSVFL
        W +W  RN++  G S  +      W  S+ + Y  A   +  +  + +  P   RW PP D  + +N DAA        G+G I+RDH G ++ ++++FL
Subjt:  WAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRST--STGLGLIIRDHLGVLLVAKSVFL

Query:  PMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIM-KIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASSSCLW
            +P  AE   +L+ ++L  S    R  ++SDC   +R++   + T   E+  I+ +I       E    MH  R CN  AH+LA++A++  SS  W
Subjt:  PMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIM-KIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASSSCLW

A0A6J1BQ49 uncharacterized protein LOC1110047864.7e-7790.8Show/hide
Query:  DLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLVA
        DLAAFT WAIWCDRNS AHGSSVSTPALR NWISSYFQNYSQAQENK+ISPQQ+SVPPPSCRWLPP DSAMKVNSDAACRSTSTGLGLIIRDH GVLLVA
Subjt:  DLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLVA

Query:  KSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMK
        KS+FLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLF+MG+E+  + K
Subjt:  KSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMK

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-4444.64Show/hide
Query:  LVNGVTPKDCLFRGDLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGL
        L   + PKD     +LAA T W IW DRNSL HG  VS    +  W++ +  ++SQAQ +      Q++  P    W P    ++K+N+DAACR  ST  
Subjt:  LVNGVTPKDCLFRGDLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGL

Query:  GLIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFC
        G IIRD    L+ A S+ +P PL+PL AEIR ILE LK AA+ ++T L VESD   AI+L++ ++ T G E NW+M+I+++   F  ISF HS R CN  
Subjt:  GLIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFC

Query:  AHSLAKWAI-SASSSCLWQFPFSSRLMDLVKGD
        AH LAKW I S S++  W F F + L+DLV+ D
Subjt:  AHSLAKWAI-SASSSCLWQFPFSSRLMDLVKGD

A0A6J1DZK3 uncharacterized protein LOC1110249685.8e-1931.25Show/hide
Query:  LAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQEN--KKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLV
        L   TCWA+W DR++L +   +    ++  WI  Y +       N  K+  P+ N        W PP    +K+N+DAA     +G+G+++R+     +V
Subjt:  LAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQEN--KKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLGLIIRDHLGVLLV

Query:  AKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASS
           V   M   PL A+I  I E L LA      R+VVE+D  EA+ L+       G+ ++W+  IR+ A  F+ I F H  R  N  A+ L +  IS   
Subjt:  AKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAKWAISASS

Query:  SCLWQFPF
          LW+  F
Subjt:  SCLWQFPF

A0A803Q1F8 Uncharacterized protein1.2e-1631.34Show/hide
Query:  VTPKDCLFRGDLAAF--TCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAAC--RSTSTGL
        +T KD L + +   F    W IW  RN     +      +   WI    +         +ISP Q  +  P+  W PP   +  +NSD +        GL
Subjt:  VTPKDCLFRGDLAAF--TCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAAC--RSTSTGL

Query:  GLIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFC
        G+IIRDHLG L+ A++VF+P  L+ L AE   I  ALK+A   S  ++ + SD Q  I+ + G+  +     + ++       +F+++SF+ SP++CN  
Subjt:  GLIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFC

Query:  AHSLAKWAISASSSCLW
        AH LAKW      S +W
Subjt:  AHSLAKWAISASSSCLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACCCGGTTATGGTTCAACCAATAACTGGAAGTCCCTCTCGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCGGAGTCAGCATTTAAGGGAACAC
TCATCTACTCCCCTAACGTCGGGAAGGAGTGAATTCCATCTTGTGAAGTTATGTTCCCAGCTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCG
GCAACTCGGGCCACTCTCACCCATACAGATCAAAGAACGAGCCCTCACGGGCAAAAGTCCATAACTCACTCAGGATTGAGAATGAGTTGCCTAGTCATCCTAAGA
AATGACAATCTATTAGTTAACGGTGTTACACCTAAAGATTGCCTATTTCGCGGAGATCTTGCTGCTTTTACCTGTTGGGCGATTTGGTGTGATCGAAATTCTCTA
GCCCATGGTTCTTCTGTCTCCACCCCTGCTTTAAGGTACAATTGGATTAGTTCTTATTTTCAGAATTACTCACAAGCTCAAGAAAATAAGAAAATCTCACCGCAG
CAGAATTCGGTCCCTCCCCCATCCTGTCGTTGGCTTCCTCCTTGCGACTCAGCTATGAAGGTGAACTCTGATGCAGCCTGTCGTTCTACATCAACAGGGCTAGGT
CTTATTATCAGAGACCATTTGGGGGTTTTGTTGGTAGCGAAATCAGTGTTTCTGCCGATGCCATTGAACCCTCTTTTTGCCGAAATCAGAGGAATTTTGGAAGCT
CTAAAGCTCGCTGCCTCACGGAGTTACACTCGTCTGGTTGTAGAATCTGATTGCCAAGAAGCCATTCGCCTTGTTCAAGGAGATCTGTTCACGATGGGAAAAGAA
ATGAATTGGATTATGAAAATTCGATCGATAGCCCTAGCGTTCGAATCAATTTCCTTCATGCACTCCCCCCGTTCGTGTAATTTTTGTGCGCATTCCTTAGCCAAA
TGGGCAATTTCGGCCTCATCCTCGTGTTTATGGCAGTTTCCCTTCTCCTCTCGATTAATGGATCTTGTAAAAGGGGATTCCCTTCAACCGTTGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAACCCGGTTATGGTTCAACCAATAACTGGAAGTCCCTCTCGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCGGAGTCAGCATTTAAGGGAACAC
TCATCTACTCCCCTAACGTCGGGAAGGAGTGAATTCCATCTTGTGAAGTTATGTTCCCAGCTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCG
GCAACTCGGGCCACTCTCACCCATACAGATCAAAGAACGAGCCCTCACGGGCAAAAGTCCATAACTCACTCAGGATTGAGAATGAGTTGCCTAGTCATCCTAAGA
AATGACAATCTATTAGTTAACGGTGTTACACCTAAAGATTGCCTATTTCGCGGAGATCTTGCTGCTTTTACCTGTTGGGCGATTTGGTGTGATCGAAATTCTCTA
GCCCATGGTTCTTCTGTCTCCACCCCTGCTTTAAGGTACAATTGGATTAGTTCTTATTTTCAGAATTACTCACAAGCTCAAGAAAATAAGAAAATCTCACCGCAG
CAGAATTCGGTCCCTCCCCCATCCTGTCGTTGGCTTCCTCCTTGCGACTCAGCTATGAAGGTGAACTCTGATGCAGCCTGTCGTTCTACATCAACAGGGCTAGGT
CTTATTATCAGAGACCATTTGGGGGTTTTGTTGGTAGCGAAATCAGTGTTTCTGCCGATGCCATTGAACCCTCTTTTTGCCGAAATCAGAGGAATTTTGGAAGCT
CTAAAGCTCGCTGCCTCACGGAGTTACACTCGTCTGGTTGTAGAATCTGATTGCCAAGAAGCCATTCGCCTTGTTCAAGGAGATCTGTTCACGATGGGAAAAGAA
ATGAATTGGATTATGAAAATTCGATCGATAGCCCTAGCGTTCGAATCAATTTCCTTCATGCACTCCCCCCGTTCGTGTAATTTTTGTGCGCATTCCTTAGCCAAA
TGGGCAATTTCGGCCTCATCCTCGTGTTTATGGCAGTTTCCCTTCTCCTCTCGATTAATGGATCTTGTAAAAGGGGATTCCCTTCAACCGTTGCCCTAG
Protein sequenceShow/hide protein sequence
MNNPVMVQPITGSPSRPMRGWGPLFKSRSQHLREHSSTPLTSGRSEFHLVKLCSQLPTRSRPQNGRNVESATRATLTHTDQRTSPHGQKSITHSGLRMSCLVILR
NDNLLVNGVTPKDCLFRGDLAAFTCWAIWCDRNSLAHGSSVSTPALRYNWISSYFQNYSQAQENKKISPQQNSVPPPSCRWLPPCDSAMKVNSDAACRSTSTGLG
LIIRDHLGVLLVAKSVFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFTMGKEMNWIMKIRSIALAFESISFMHSPRSCNFCAHSLAK
WAISASSSCLWQFPFSSRLMDLVKGDSLQPLP