; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc10g04000 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g04000
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr10:2797035..2799247
RNA-Seq ExpressionMoc10g04000
SyntenyMoc10g04000
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB36258.1 hypothetical protein L484_013693 [Morus notabilis]2.3e-1452.05Show/hide
Query:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEF-KRRVKCSRCGRYGHNRKSCR
        LQN    ++HPLG  S+WN+P+++K +K+ +P+ K P GRP+  +IPSA E  K +VKC RCGR+GHNRK+C+
Subjt:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEF-KRRVKCSRCGRYGHNRKSCR

XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]1.1e-6496.88Show/hide
Query:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF
        MSYANL EEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILD MPINTSSSMDNGIQSFGQFYR 
Subjt:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF

Query:  IDVANISATFHIKVNDKFCGKRNLQNAL
        IDVANISATFHI VNDKFCGKRNLQNAL
Subjt:  IDVANISATFHIKVNDKFCGKRNLQNAL

XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]5.7e-1386.96Show/hide
Query:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRI
        L++  SGSIHPLGHQSSWNIPE VKIIKML PNVKRPAGRPKKLRI
Subjt:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRI

XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]1.1e-5130.24Show/hide
Query:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF
        MSYA L+++IM+ LGLVGSSDYPD+F+C+GT QF+ KDMKISDDKDVHWLYN+I NG  QCCSLVVDCRNCLSN+LD MPINTSSS+DNGI S GQF+  
Subjt:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF

Query:  IDVANISATFHIKVNDKFCGKRNLQNAL------------------------------------------------------------------------
        IDV NI   FHI+VNDKFCGK+NLQNAL                                                                        
Subjt:  IDVANISATFHIKVNDKFCGKRNLQNAL------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------------SGSIHPLGHQSSWNIPEHVKIIK
                                                                                     SGSIHPLGHQSSWNIPE VKIIK
Subjt:  -----------------------------------------------------------------------------SGSIHPLGHQSSWNIPEHVKIIK

Query:  MLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCRFSLTQ
        ML PNVKRPAGRPKKLRIPSALEFK+RVKCSRCGRYGHNRKSC+FSLTQ
Subjt:  MLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCRFSLTQ

XP_022159005.1 uncharacterized protein LOC111025451 [Momordica charantia]3.5e-4777.12Show/hide
Query:  MKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRFIDVANISATF
        M+ L LVGSSDYP+VF+C+GT +FIKKDMKI DDKDV+WL+N+  NGA+QCCSLVVDCRNCLSN+LD MPIN SSS+DNGI S GQF+  IDVANISA F
Subjt:  MKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRFIDVANISATF

Query:  HIKVNDKFCGKRNLQNAL
        HI+VNDKFCG RNLQNAL
Subjt:  HIKVNDKFCGKRNLQNAL

XP_024027683.1 uncharacterized protein LOC21396860 [Morus notabilis]2.3e-1452.05Show/hide
Query:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEF-KRRVKCSRCGRYGHNRKSCR
        LQN    ++HPLG  S+WN+P+++K +K+ +P+ K P GRP+  +IPSA E  K +VKC RCGR+GHNRK+C+
Subjt:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEF-KRRVKCSRCGRYGHNRKSCR

TrEMBL top hitse value%identityAlignment
A0A438DZB9 Uncharacterized protein2.1e-1346.84Show/hide
Query:  KFCGKRNLQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCR
        K+   + L ++ S SI+P G++  W +P H++   +L P  +RP GRP+K+RIPS  E KR  +CSRCG+YGHNRK+C+
Subjt:  KFCGKRNLQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCR

A0A6J1C328 uncharacterized protein LOC1110069945.3e-6596.88Show/hide
Query:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF
        MSYANL EEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILD MPINTSSSMDNGIQSFGQFYR 
Subjt:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF

Query:  IDVANISATFHIKVNDKFCGKRNLQNAL
        IDVANISATFHI VNDKFCGKRNLQNAL
Subjt:  IDVANISATFHIKVNDKFCGKRNLQNAL

A0A6J1C328 uncharacterized protein LOC1110069942.8e-1386.96Show/hide
Query:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRI
        L++  SGSIHPLGHQSSWNIPE VKIIKML PNVKRPAGRPKKLRI
Subjt:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRI

A0A6J1C328 uncharacterized protein LOC1110069945.1e-5230.24Show/hide
Query:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF
        MSYA L+++IM+ LGLVGSSDYPD+F+C+GT QF+ KDMKISDDKDVHWLYN+I NG  QCCSLVVDCRNCLSN+LD MPINTSSS+DNGI S GQF+  
Subjt:  MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRF

Query:  IDVANISATFHIKVNDKFCGKRNLQNAL------------------------------------------------------------------------
        IDV NI   FHI+VNDKFCGK+NLQNAL                                                                        
Subjt:  IDVANISATFHIKVNDKFCGKRNLQNAL------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------------SGSIHPLGHQSSWNIPEHVKIIK
                                                                                     SGSIHPLGHQSSWNIPE VKIIK
Subjt:  -----------------------------------------------------------------------------SGSIHPLGHQSSWNIPEHVKIIK

Query:  MLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCRFSLTQ
        ML PNVKRPAGRPKKLRIPSALEFK+RVKCSRCGRYGHNRKSC+FSLTQ
Subjt:  MLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCRFSLTQ

A0A6J1DXF3 uncharacterized protein LOC1110254511.7e-4777.12Show/hide
Query:  MKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRFIDVANISATF
        M+ L LVGSSDYP+VF+C+GT +FIKKDMKI DDKDV+WL+N+  NGA+QCCSLVVDCRNCLSN+LD MPIN SSS+DNGI S GQF+  IDVANISA F
Subjt:  MKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRFIDVANISATF

Query:  HIKVNDKFCGKRNLQNAL
        HI+VNDKFCG RNLQNAL
Subjt:  HIKVNDKFCGKRNLQNAL

W9R1I1 Uncharacterized protein1.1e-1452.05Show/hide
Query:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEF-KRRVKCSRCGRYGHNRKSCR
        LQN    ++HPLG  S+WN+P+++K +K+ +P+ K P GRP+  +IPSA E  K +VKC RCGR+GHNRK+C+
Subjt:  LQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEF-KRRVKCSRCGRYGHNRKSCR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATACGCCAATTTGATGGAAGAAATAATGAAAATTTTGGGATTGGTAGGTAGTTCTGATTATCCTGATGTATTTGCATGCGTTGGAACCATTCAGTTTATTAAGAA
GGATATGAAAATATCAGATGACAAAGATGTGCATTGGTTGTACAATATCATTTCTAATGGTGCTATCCAATGCTGTAGTTTAGTTGTCGATTGTAGAAATTGTCTTTCTA
ACATATTAGACCACATGCCTATTAATACTTCAAGTTCTATGGACAATGGTATACAGTCATTTGGTCAATTTTATCGGTTCATTGATGTTGCCAATATTTCGGCTACTTTC
CACATTAAAGTGAATGACAAGTTTTGTGGAAAGCGTAATTTACAGAATGCATTGAGTGGAAGTATACACCCATTAGGTCATCAGTCAAGTTGGAATATCCCTGAACATGT
GAAGATTATAAAGATGCTGTCTCCCAATGTGAAACGTCCTGCTGGTAGACCAAAGAAGTTGAGGATTCCATCAGCATTAGAATTTAAACGACGTGTTAAATGCAGTCGTT
GTGGTAGATATGGTCACAATAGGAAGTCGTGCAGATTTTCTCTTACGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATACGCCAATTTGATGGAAGAAATAATGAAAATTTTGGGATTGGTAGGTAGTTCTGATTATCCTGATGTATTTGCATGCGTTGGAACCATTCAGTTTATTAAGAA
GGATATGAAAATATCAGATGACAAAGATGTGCATTGGTTGTACAATATCATTTCTAATGGTGCTATCCAATGCTGTAGTTTAGTTGTCGATTGTAGAAATTGTCTTTCTA
ACATATTAGACCACATGCCTATTAATACTTCAAGTTCTATGGACAATGGTATACAGTCATTTGGTCAATTTTATCGGTTCATTGATGTTGCCAATATTTCGGCTACTTTC
CACATTAAAGTGAATGACAAGTTTTGTGGAAAGCGTAATTTACAGAATGCATTGAGTGGAAGTATACACCCATTAGGTCATCAGTCAAGTTGGAATATCCCTGAACATGT
GAAGATTATAAAGATGCTGTCTCCCAATGTGAAACGTCCTGCTGGTAGACCAAAGAAGTTGAGGATTCCATCAGCATTAGAATTTAAACGACGTGTTAAATGCAGTCGTT
GTGGTAGATATGGTCACAATAGGAAGTCGTGCAGATTTTCTCTTACGCAATAG
Protein sequenceShow/hide protein sequence
MSYANLMEEIMKILGLVGSSDYPDVFACVGTIQFIKKDMKISDDKDVHWLYNIISNGAIQCCSLVVDCRNCLSNILDHMPINTSSSMDNGIQSFGQFYRFIDVANISATF
HIKVNDKFCGKRNLQNALSGSIHPLGHQSSWNIPEHVKIIKMLSPNVKRPAGRPKKLRIPSALEFKRRVKCSRCGRYGHNRKSCRFSLTQ