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Moc10g06880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g06880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTranscription termination factor MTERF5
Genome locationchr10:4975177..4977076
RNA-Seq ExpressionMoc10g06880
SyntenyMoc10g06880
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136933.1 uncharacterized protein LOC111008506 isoform X1 [Momordica charantia]3.0e-62100Show/hide
Query:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
        MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
Subjt:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI

Query:  AFSSVEKTLKPKIEFFQNLGLVGSDL
        AFSSVEKTLKPKIEFFQNLGLVGSDL
Subjt:  AFSSVEKTLKPKIEFFQNLGLVGSDL

XP_022136934.1 uncharacterized protein LOC111008506 isoform X2 [Momordica charantia]1.4e-80100Show/hide
Query:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
        MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
Subjt:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI

Query:  AFSSVEKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK
        AFSSVEKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK
Subjt:  AFSSVEKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK

XP_022984676.1 uncharacterized protein LOC111482884 isoform X4 [Cucurbita maxima]2.1e-3971.54Show/hide
Query:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI
        MYALRS FS+S+RH  P    ID PL Y F SSSS  +ASA+  IVVQYL+D F LS ARA++IMS R+G+ STEKP+SV KYLSELGFS+AHIQS IR+
Subjt:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI

Query:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        +PQIAFS++EKTLKPKIEFFQNLGLVGSDL
Subjt:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL

XP_022984677.1 uncharacterized protein LOC111482887 [Cucurbita maxima]2.1e-3971.54Show/hide
Query:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI
        MYALRS FS+S+RH  P    ID PL Y F SSSS  +ASA+  IVVQYL+D F LS ARA++IMS R+G+ STEKP+SV KYLSELGFS+AHIQS IR+
Subjt:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI

Query:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        +PQIAFS++EKTLKPKIEFFQNLGLVGSDL
Subjt:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL

XP_038888519.1 transcription termination factor MTERF5, chloroplastic-like [Benincasa hispida]9.5e-4071.21Show/hide
Query:  MYALRSIFSLSARHCHP----IDPPLCYFF--SSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAI
        MYALR  FS+S+R   P    I P L YFF  SSSSS  ++SA+NAIVVQYL+D F LS ARA +IMSCR+G++STEKP+SV KYLS+LGFSDAHI+SAI
Subjt:  MYALRSIFSLSARHCHP----IDPPLCYFF--SSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAI

Query:  RISPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        R++PQIAFS++EKTLKPKIEFFQNLGLVGSDL
Subjt:  RISPQIAFSSVEKTLKPKIEFFQNLGLVGSDL

TrEMBL top hitse value%identityAlignment
A0A6J1C5Q5 uncharacterized protein LOC111008506 isoform X27.0e-81100Show/hide
Query:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
        MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
Subjt:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI

Query:  AFSSVEKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK
        AFSSVEKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK
Subjt:  AFSSVEKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK

A0A6J1C8W1 uncharacterized protein LOC111008506 isoform X11.5e-62100Show/hide
Query:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
        MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI
Subjt:  MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQI

Query:  AFSSVEKTLKPKIEFFQNLGLVGSDL
        AFSSVEKTLKPKIEFFQNLGLVGSDL
Subjt:  AFSSVEKTLKPKIEFFQNLGLVGSDL

A0A6J1J2U2 uncharacterized protein LOC1114828871.0e-3971.54Show/hide
Query:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI
        MYALRS FS+S+RH  P    ID PL Y F SSSS  +ASA+  IVVQYL+D F LS ARA++IMS R+G+ STEKP+SV KYLSELGFS+AHIQS IR+
Subjt:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI

Query:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        +PQIAFS++EKTLKPKIEFFQNLGLVGSDL
Subjt:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL

A0A6J1J5Y4 uncharacterized protein LOC111482884 isoform X41.0e-3971.54Show/hide
Query:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI
        MYALRS FS+S+RH  P    ID PL Y F SSSS  +ASA+  IVVQYL+D F LS ARA++IMS R+G+ STEKP+SV KYLSELGFS+AHIQS IR+
Subjt:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI

Query:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        +PQIAFS++EKTLKPKIEFFQNLGLVGSDL
Subjt:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL

A0A6J1JB80 uncharacterized protein LOC111482884 isoform X11.0e-3971.54Show/hide
Query:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI
        MYALRS FS+S+RH  P    ID PL Y F SSSS  +ASA+  IVVQYL+D F LS ARA++IMS R+G+ STEKP+SV KYLSELGFS+AHIQS IR+
Subjt:  MYALRSIFSLSARHCHP----IDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRI

Query:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        +PQIAFS++EKTLKPKIEFFQNLGLVGSDL
Subjt:  SPQIAFSSVEKTLKPKIEFFQNLGLVGSDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G62120.1 Mitochondrial transcription termination factor family protein3.2e-0934.91Show/hide
Query:  FSSSS-----SRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSVEKTLKPKIEFFQNLG
        FSSS+     S R+    +   V YLVD+  L+T  A +I S +   ++   P SV   L   GF+D+ I + IR  P++     EK+L PK++F Q++G
Subjt:  FSSSS-----SRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSVEKTLKPKIEFFQNLG

Query:  LVGSDL
           S+L
Subjt:  LVGSDL

AT3G46950.1 Mitochondrial transcription termination factor family protein1.0e-0729.41Show/hide
Query:  FSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSVEKTLKPKIEFFQNLGLVGSD
        FSS+ ++  +   +   V YLV++  L T +    +S +   E    P SV   L   GF D+ I   IR  P++  +  EK+L+PK++F ++ G   S+
Subjt:  FSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSVEKTLKPKIEFFQNLGLVGSD

Query:  LV
        ++
Subjt:  LV

AT5G64950.1 Mitochondrial transcription termination factor family protein2.1e-1340.82Show/hide
Query:  SSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSVEKTLKPKIEFFQNLGLVGSDL
        SS+   AS +N   V++L DN       A+AI      ++S E+PRSV + L    FSD  IQ +IR+ P++ F +VEK L+PK+ FF+++G  GS L
Subjt:  SSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSVEKTLKPKIEFFQNLGLVGSDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGCTCTGAGATCAATTTTCTCTCTTTCTGCTCGCCATTGCCATCCAATCGATCCGCCCTTGTGCTATTTTTTCTCTTCTTCTTCTTCCCGCCGCGAAGCC
TCTGCTGCAAATGCCATCGTCGTTCAATACCTTGTCGACAACTTTAATTTGTCCACAGCCAGAGCGCTGGCGATTATGAGCTGCCGCAAGGGCGTTGAATCAACC
GAAAAGCCTCGATCCGTTTGCAAATATCTTTCAGAGCTCGGATTCTCCGACGCCCACATTCAATCCGCGATCCGCATCTCGCCGCAAATCGCGTTTTCTAGCGTT
GAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCCTGGTCGGCTCCGATTTGGTTGCAGGGTCTCAATTGGGCCAAATGACTGGATTTTGGCAG
TTCAACGAACAGGAGGGATTTGAATCGTTGAATTTTAGCAGAGATAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACGCTCTGAGATCAATTTTCTCTCTTTCTGCTCGCCATTGCCATCCAATCGATCCGCCCTTGTGCTATTTTTTCTCTTCTTCTTCTTCCCGCCGCGAAGCC
TCTGCTGCAAATGCCATCGTCGTTCAATACCTTGTCGACAACTTTAATTTGTCCACAGCCAGAGCGCTGGCGATTATGAGCTGCCGCAAGGGCGTTGAATCAACC
GAAAAGCCTCGATCCGTTTGCAAATATCTTTCAGAGCTCGGATTCTCCGACGCCCACATTCAATCCGCGATCCGCATCTCGCCGCAAATCGCGTTTTCTAGCGTT
GAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCCTGGTCGGCTCCGATTTGGTTGCAGGGTCTCAATTGGGCCAAATGACTGGATTTTGGCAG
TTCAACGAACAGGAGGGATTTGAATCGTTGAATTTTAGCAGAGATAAGTAA
Protein sequenceShow/hide protein sequence
MYALRSIFSLSARHCHPIDPPLCYFFSSSSSRREASAANAIVVQYLVDNFNLSTARALAIMSCRKGVESTEKPRSVCKYLSELGFSDAHIQSAIRISPQIAFSSV
EKTLKPKIEFFQNLGLVGSDLVAGSQLGQMTGFWQFNEQEGFESLNFSRDK