CuGenDBv2

Gene ID	Moc10g10860
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Genome location	chr10:8288756..8289154
RNA-Seq Expression	Moc10g10860
Synteny	Moc10g10860
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0003824 - catalytic activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAN60145.1 hypothetical protein VITISV_019412 [Vitis vinifera]

2.0e-22

44.27

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   +VKE T  +L++AL   YEKPS N K+ +  K FN+ M E  SV  H+NE   I N+L ++ I  D+E++ + +L SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWET+++A+SNS G   LK++DI D  L+EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

KAG7584790.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]

1.5e-22

45.04

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   V KE T + L++ L D YEKPS N K+ +  K F++ MEEG  V +H+NE   I+N+L  + I+ D+EV+ + LL SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWE ++ A+SNS+G+  LKF D+ D  L EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

KAG7593230.1 Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]

1.5e-22

45.04

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   V KE T + L++ L D YEKPS N K+ +  K F++ MEEG  V +H+NE   I+N+L  + I+ D+EV+ + LL SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWE ++ A+SNS+G+  LKF D+ D  L EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

RVW62803.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.6e-22

45.04

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   VVKE T  +L++AL D YEKPS N K+ +  K FN+ M E  SV  H+NE   I N+L  + I  D+E++ + +L SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWE +++A+SNS G   LK++DI D  L+EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

RVW71155.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.0e-22

44.27

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   +VKE T  +L++AL   YEKPS N K+ +  K FN+ M E  SV  H+NE   I N+L ++ I  D+E++ + +L SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWET+++A+SNS G   LK++DI D  L+EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

TrEMBL top hits

e value

%identity

Alignment

A0A0D3AEM1 CCHC-type domain-containing protein

3.9e-24

45.8

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   VVKE T + L++ L D YEKPS N+K+ +  K F++ MEEG  V +HINE   I+N+L  + I+ ++EV+ + LL SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWE++++A+SNS+G   LKF+D+ D  L+EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

A0A0D3BM55 Uncharacterized protein

5.6e-23

45.04

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   V KE T + L++ L D YEKPS N K+ +  K F++ MEEG  V +H+NE   I+N+L  + I+ D+EV+ + LL SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWE ++ A+SNS+G   LKF+D+ D  L+EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

A0A2N9GZ62 CCHC-type domain-containing protein

7.4e-23

45.8

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   VVKETT   L+ AL   YEKPS N K+ +  K FN+ M EG +V  H+NE   I N+L  + I+ D+E++ + +L SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWE +++A+SNS+G   LK+ DI D  LSEE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

A0A438GG25 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.6e-23

44.27

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D Q +  IR++LS  V   +VKE T  +L++AL   YEKPS N K+ +  K FN+ M E  SV  H+NE   I N+L ++ I  D+E++ + +L SLP+
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SWET+++A+SNS G   LK++DI D  L+EE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

A0A803NDX7 Uncharacterized protein

4.3e-23

45.8

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +D QA+  IR++LS  V   + KETT   L++AL + YEKPS + K+ +  + F++ M EG SV  H+NEL ++  +L  + IK D+EV  + LL+SLPD
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        SW     A+S+S G+N LKF D+CD  LSEE
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-11

29.77

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Query:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD
        +DE+A   IR+ LS  V + ++ E TA+ +   L+  Y   +   K+ +  + + +HM EGT+  SH+N    ++ +L  + +KI+EE K + LL SLP 
Subjt:  MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPD

Query:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE
        S++ +   + +  G  +++  D+  A L  E
Subjt:  SWETIKIAMSNSLGDNSLKFSDICDAALSEE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGAGCAGGCCGTTGAAAACATTAGAATGTCTTTATCAATGGGGGTATGCAGTCTCGTGGTGAAAGAGACGACTGCGAAAGAATTGTTGCAGGCCTTGCAA
GACAGGTATGAGAAACCTTCTACCAATACAAAAATACTTATATGGACGAAGTATTTTAATATCCACATGGAGGAGGGAACCTCAGTGAATTCCCACATTAATGAG
CTCGCCAACATCTTGAACAAATTAGAATGGATGAGTATCAAGATCGATGAGGAGGTAAAGGTTATGAGGTTGCTGACATCTTTGCCTGACAGTTGGGAGACGATA
AAGATTGCGATGTCGAATTCGTTAGGGGACAATAGCTTGAAATTTTCAGATATTTGTGATGCCGCCTTATCTGAGGAAGCCTAG

mRNA sequence

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Protein sequence

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MDEQAVENIRMSLSMGVCSLVVKETTAKELLQALQDRYEKPSTNTKILIWTKYFNIHMEEGTSVNSHINELANILNKLEWMSIKIDEEVKVMRLLTSLPDSWETI
KIAMSNSLGDNSLKFSDICDAALSEEA

Moc10g10860 (gene) of Bitter gourd (OHB3-1) v2 genome