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Moc10g12280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g12280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr10:9368545..9369000
RNA-Seq ExpressionMoc10g12280
SyntenyMoc10g12280
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]4.4e-1041.18Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS
        +N D +W E R VGG+GW+  D    +V AG C IREK+ +  LE   ++ GL+ I       I+LE+DS  V++L+++EDVD++
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-1333.59Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR
        +N +  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GLR I+      IHLE+DS   + L+  +  D +EI W+++EI  ++  
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR

Query:  KSMVSVNFIHREANSAAHQIARLFTEDE
          +VS+  I REAN  AH +AR   E++
Subjt:  KSMVSVNFIHREANSAAHQIARLFTEDE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-1232.64Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLA
        +N D +W +    GG+GW+ +     +V AG  ++    +VK LEA A+L GLRN+ NL     +H+ETDS  V  L+  +  D+++  W+V+EI  L  
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLA

Query:  RKSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEGF--WRSL
           +++   + RE N  AH +A+  +    ++IW + F  W S+
Subjt:  RKSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEGF--WRSL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-1233.09Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVD
        +N D  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GL        R IQ      IHLE+DS   + L+  +  D +EI W+++
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVD

Query:  EIKILLARKSMVSVNFIHREANSAAHQIARLFTEDE
        EI  ++    +VS+  I REAN  AH +AR   E++
Subjt:  EIKILLARKSMVSVNFIHREANSAAHQIARLFTEDE

XP_024041100.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina]7.6e-1031.39Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR
        +N+D          G+G V +DSS  ++ A       +  V  +EA A+L G++     +   I +E+DS  VV+L  +    ++EICW V+EI+  L  
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR

Query:  KSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEGF
        +S  S+ F+HR  N  AH +A++  + E  ++W E F
Subjt:  KSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEGF

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.1e-1433.59Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR
        +N +  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GLR I+      IHLE+DS   + L+  +  D +EI W+++EI  ++  
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR

Query:  KSMVSVNFIHREANSAAHQIARLFTEDE
          +VS+  I REAN  AH +AR   E++
Subjt:  KSMVSVNFIHREANSAAHQIARLFTEDE

A0A6J1CQG0 uncharacterized protein LOC1110132162.1e-1041.18Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS
        +N D +W E R VGG+GW+  D    +V AG C IREK+ +  LE   ++ GL+ I       I+LE+DS  V++L+++EDVD++
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS

A0A6J1DNV9 uncharacterized protein LOC1110224036.0e-1332.64Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLA
        +N D +W +    GG+GW+ +     +V AG  ++    +VK LEA A+L GLRN+ NL     +H+ETDS  V  L+  +  D+++  W+V+EI  L  
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLA

Query:  RKSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEGF--WRSL
           +++   + RE N  AH +A+  +    ++IW + F  W S+
Subjt:  RKSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEGF--WRSL

A0A6J1DSV1 uncharacterized protein LOC1110236087.9e-1333.09Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVD
        +N D  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GL        R IQ      IHLE+DS   + L+  +  D +EI W+++
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVD

Query:  EIKILLARKSMVSVNFIHREANSAAHQIARLFTEDE
        EI  ++    +VS+  I REAN  AH +AR   E++
Subjt:  EIKILLARKSMVSVNFIHREANSAAHQIARLFTEDE

A0A6J5WPU6 Reverse transcriptase domain-containing protein3.1e-0935.56Show/hide
Query:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSH-GVVKLVEEEDVDISEICWIVDEIKILLA
        +N D  W   R  GGVGWV +DS  +++ AG        S   +E  A+ H L    N    DI +E+DS  G++ L     VD S++  IV +I+ L+A
Subjt:  MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSH-GVVKLVEEEDVDISEICWIVDEIKILLA

Query:  RKSMVSVNFIHREANSAAHQIARLFTEDEGAIIWD
          S VS  F  R  N AAH +A   ++  G  +WD
Subjt:  RKSMVSVNFIHREANSAAHQIARLFTEDEGAIIWD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein7.8e-0527.94Show/hide
Query:  MDTTWFEGRRVGGVGWV--AQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR
        +D  W +   + G GWV  A   S+  +       R   S    EA+A+   + +   LE  D+ + +DS  +V  +   +V ++EI  ++ EI+ +  R
Subjt:  MDTTWFEGRRVGGVGWV--AQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR

Query:  KSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEG
           +S  FI R  NS A   A+L     G I  D G
Subjt:  KSMVSVNFIHREANSAAHQIARLFTEDEGAIIWDEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGGACACAACTTGGTTTGAGGGAAGACGAGTTGGGGGCGTTGGCTGGGTCGCCCAAGACTCAAGCGACATGGTGGTGCAAGCTGGATATTGCTACATTAGAGA
GAAACAAAGTGTTAAATTCTTGGAAGCTTTTGCTCTTCTTCATGGTTTGAGAAATATTCAGAATCTAGAAGGATACGACATTCACCTTGAAACTGACTCTCATGGAGTGG
TGAAGTTGGTGGAGGAGGAGGATGTCGACATCTCTGAAATTTGTTGGATAGTGGACGAAATCAAGATTTTGCTGGCCCGGAAGTCAATGGTCTCGGTCAATTTTATTCAC
CGAGAGGCTAACAGCGCGGCTCATCAGATTGCCCGATTGTTCACTGAAGATGAAGGGGCTATTATTTGGGATGAGGGTTTTTGGAGATCCCTTCGTCACTCAAACTTGTT
TTTTATGACAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACATGGACACAACTTGGTTTGAGGGAAGACGAGTTGGGGGCGTTGGCTGGGTCGCCCAAGACTCAAGCGACATGGTGGTGCAAGCTGGATATTGCTACATTAGAGA
GAAACAAAGTGTTAAATTCTTGGAAGCTTTTGCTCTTCTTCATGGTTTGAGAAATATTCAGAATCTAGAAGGATACGACATTCACCTTGAAACTGACTCTCATGGAGTGG
TGAAGTTGGTGGAGGAGGAGGATGTCGACATCTCTGAAATTTGTTGGATAGTGGACGAAATCAAGATTTTGCTGGCCCGGAAGTCAATGGTCTCGGTCAATTTTATTCAC
CGAGAGGCTAACAGCGCGGCTCATCAGATTGCCCGATTGTTCACTGAAGATGAAGGGGCTATTATTTGGGATGAGGGTTTTTGGAGATCCCTTCGTCACTCAAACTTGTT
TTTTATGACAGTTTAA
Protein sequenceShow/hide protein sequence
MNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLARKSMVSVNFIH
REANSAAHQIARLFTEDEGAIIWDEGFWRSLRHSNLFFMTV