; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc10g12880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g12880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUbiquitin family protein
Genome locationchr10:9778321..9779595
RNA-Seq ExpressionMoc10g12880
SyntenyMoc10g12880
Gene Ontology termsGO:0044267 - cellular protein metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CEP02084.1 hypothetical protein PBRA_002349 [Plasmodiophora brassicae]8.1e-0755.88Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   LDV  SDTI AVKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

ETO00507.1 hypothetical protein RFI_36932 [Reticulomyxa filosa]1.1e-0640.74Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEA--------FLNFSHFWNMLFPKECKFFVW
        + G+   LDV  +DTI  VKAKIQ+++G     QRL F GK LED RTL  YNIQ      LHLV RL E         FLN   F+ +   K  + +V 
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEA--------FLNFSHFWNMLFPKECKFFVW

Query:  STIHRTPQ
          + ++ Q
Subjt:  STIHRTPQ

PKU81327.1 Ubiquitin-60S ribosomal protein L40 [Dendrobium catenatum]8.1e-0746.67Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAFLNFSHFWNMLFPKECKFF
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL  A +N       L  + CK F
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAFLNFSHFWNMLFPKECKFF

WP_055000296.1 hypothetical protein [Pseudomonas cannabina]2.1e-0759.09Show/hide
Query:  GQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        G KFPL+V  SDTI  VKA+IQ EKG+  + QRL F GK LED RTL  YNIQ+     L LVF+L
Subjt:  GQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

XP_036616899.1 ubiquitin-like [Trichosurus vulpecula]8.1e-0755.88Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+  PL+V  SDTI  VKAKIQ +KG   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

TrEMBL top hitse value%identityAlignment
A0A0G4J3X7 Ubiquitin-like domain-containing protein3.9e-0755.88Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   LDV  SDTI AVKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

A0A0P9NMU7 Ubiquitin-like domain-containing protein1.0e-0759.09Show/hide
Query:  GQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        G KFPL+V  SDTI  VKA+IQ EKG+  + QRL F GK LED RTL  YNIQ+     L LVF+L
Subjt:  GQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

A0A2I0X0B9 Ubiquitin-60S ribosomal protein L403.9e-0746.67Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAFLNFSHFWNMLFPKECKFF
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL  A +N       L  + CK F
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAFLNFSHFWNMLFPKECKFF

A0A2S6JCL8 Ubiquitin C/ubiquitin-like protein Nedd81.0e-0759.09Show/hide
Query:  GQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        G KFPL+V  SDTI  VKA+IQ EKG+  + QRL F GK LED RTL  YNIQ+     L LVF+L
Subjt:  GQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

X6LHB2 Ubiquitin-like domain-containing protein5.1e-0740.74Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEA--------FLNFSHFWNMLFPKECKFFVW
        + G+   LDV  +DTI  VKAKIQ+++G     QRL F GK LED RTL  YNIQ      LHLV RL E         FLN   F+ +   K  + +V 
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEA--------FLNFSHFWNMLFPKECKFFVW

Query:  STIHRTPQ
          + ++ Q
Subjt:  STIHRTPQ

SwissProt top hitse value%identityAlignment
P0CG82 Polyubiquitin9.0e-0954.41Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   LDV  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

P0DJ25 Ubiquitin-60S ribosomal protein L409.0e-0954.41Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   LDV  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

P33190 Ubiquitin-60S ribosomal protein L409.0e-0954.41Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   LDV  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

P46575 Ubiquitin-60S ribosomal protein L409.0e-0954.41Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   LDV  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

P69313 Ubiquitin1.5e-0851.39Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAF
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL   F
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAF

Arabidopsis top hitse value%identityAlignment
AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein2.4e-0952.94Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

AT1G31340.1 related to ubiquitin 12.4e-0952.94Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

AT1G65350.1 ubiquitin 132.4e-0952.94Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

AT2G35635.1 ubiquitin 72.4e-0952.94Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL

AT2G47110.1 ubiquitin 62.4e-0952.94Show/hide
Query:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL
        + G+   L+V  SDTI  VKAKIQ ++G   + QRL F GK LED RTL  YNIQ      LHLV RL
Subjt:  MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGCCAGAAATTCCCTTTAGATGTTCTGAAATCGGACACAATCGCTGCTGTCAAAGCTAAAATACAGCAGGAAAAAGGGTATGACAAGAACGCCCAACGTCTTAC
GTTTTTTGGAAAGATTCTGGAGGATCATCGGACTCTCGAATACTATAATATTCAGCTGAGAGGCCACTTACCATTGCATTTGGTGTTTCGTCTTCCTGAGGCTTTTTTGA
ACTTCTCCCACTTTTGGAACATGCTGTTCCCAAAAGAATGTAAATTCTTTGTTTGGAGTACTATCCACCGAACGCCTCAACAGTCACGAAAAAGTACAGACAAGGCTCCA
TCCTTTTTGGCGTTTTCAGCATCAATCTTACTCTCTCCCAGAATTGATGACTTCATTAAGGAATTCCTTTTCCTCTCCGTCTCTAGAGAGTTGAAGGGACATTTTGTGGA
GCAATGCAAAGCTATGGTCTCTATCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTGGCCAGAAATTCCCTTTAGATGTTCTGAAATCGGACACAATCGCTGCTGTCAAAGCTAAAATACAGCAGGAAAAAGGGTATGACAAGAACGCCCAACGTCTTAC
GTTTTTTGGAAAGATTCTGGAGGATCATCGGACTCTCGAATACTATAATATTCAGCTGAGAGGCCACTTACCATTGCATTTGGTGTTTCGTCTTCCTGAGGCTTTTTTGA
ACTTCTCCCACTTTTGGAACATGCTGTTCCCAAAAGAATGTAAATTCTTTGTTTGGAGTACTATCCACCGAACGCCTCAACAGTCACGAAAAAGTACAGACAAGGCTCCA
TCCTTTTTGGCGTTTTCAGCATCAATCTTACTCTCTCCCAGAATTGATGACTTCATTAAGGAATTCCTTTTCCTCTCCGTCTCTAGAGAGTTGAAGGGACATTTTGTGGA
GCAATGCAAAGCTATGGTCTCTATCATTTAG
Protein sequenceShow/hide protein sequence
MRGQKFPLDVLKSDTIAAVKAKIQQEKGYDKNAQRLTFFGKILEDHRTLEYYNIQLRGHLPLHLVFRLPEAFLNFSHFWNMLFPKECKFFVWSTIHRTPQQSRKSTDKAP
SFLAFSASILLSPRIDDFIKEFLFLSVSRELKGHFVEQCKAMVSII