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Moc10g14700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g14700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:11177331..11178888
RNA-Seq ExpressionMoc10g14700
SyntenyMoc10g14700
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65867.1 hypothetical protein VITISV_034935 [Vitis vinifera]3.0e-1932.46Show/hide
Query:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD------------------S
        G+ KF   +F++W+MQ++D+L  +K+H   LG +P  M  ++W  +D Q +  +R++LS +V   V KE T  DL+KAL +                  S
Subjt:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD------------------S

Query:  WKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSGSSSGEVECYYCHKKGHVKRFY
        W+ M+ +VSNS G+  LK+  I D  ++EE+ ++  G+ S S S +  E       +N  +G+ N     + R    SG    +V+C+ C K GH KR  
Subjt:  WKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSGSSSGEVECYYCHKKGHVKRFY

Query:  RKFKEDFEKRNNSTNVVTEEEQIEEFLA
        +  K+  +  ++S N VTEE Q    LA
Subjt:  RKFKEDFEKRNNSTNVVTEEEQIEEFLA

RVW74967.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.2e-1932.89Show/hide
Query:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD------------------S
        G+ KF   +F++W+MQ++D+L  +K+H   LG +P  M  ++W  +D Q +  +R+ LS +V   V KE T  DL+KAL +                  S
Subjt:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD------------------S

Query:  WKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSGSSSGEVECYYCHKKGHVKRFY
        W+ M+ +VSNS G+  LK+  I D  ++EE+ ++  G+ S S+S +  E       +N  +G+       Q R    SG    +V+C+ C K GH KR  
Subjt:  WKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSGSSSGEVECYYCHKKGHVKRFY

Query:  RKFKEDFEKRNNSTNVVTEEEQIEEFLA
        +  K+  +  ++S NVVTEE Q    LA
Subjt:  RKFKEDFEKRNNSTNVVTEEEQIEEFLA

RVX08463.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.0e-1834.19Show/hide
Query:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD------------------S
        G+ KF   +F++W+MQ++D+L  +K+H   LG +P  M  ++W   D Q +  +R++LS +V   V KE T  DL+KAL +                  S
Subjt:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD------------------S

Query:  WKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSG-----SSSG-EVECYYCHKKG
        W+ M+ +VSNS G+  LK+  I D  ++EE+ ++  G+ S S         SAL ++ +G+G  N N  Q +  SR S      S SG +V+C+ C K G
Subjt:  WKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSG-----SSSG-EVECYYCHKKG

Query:  HVKRFYRKFKEDFEKRNNSTNVVTEEEQIEEFLA
        H KR  +  K+  +  ++S N VTEE Q    LA
Subjt:  HVKRFYRKFKEDFEKRNNSTNVVTEEEQIEEFLA

XP_022152155.1 cinnamoyl-CoA reductase-like SNL6 [Momordica charantia]2.9e-2281.82Show/hide
Query:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR
        + DQKNLPS QVKQLRST+KGNENLIGHRVHTSAVR   ELVKSHRRISAL+GT S+SSVAT L GS KS GESSFR
Subjt:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR

XP_022157059.1 uncharacterized protein LOC111023870 [Momordica charantia]4.1e-2484.42Show/hide
Query:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR
        R DQKNLPSA VKQLRSTEKGNENLIGH+VHTSAVRRS ELVKSHRRISA +GT  VSSV TDLGGS KS GESSF+
Subjt:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR

TrEMBL top hitse value%identityAlignment
A0A2N9F2J7 Uncharacterized protein5.1e-2032.49Show/hide
Query:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD-------------------
        G+ KF   +F +W+MQ++D+L  KK+H   LGE+P  M D +W  +D Q +  +R++LS +V   V KE T   L+ AL D                   
Subjt:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQD-------------------

Query:  --------------SWKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGK-MNYN-GKQQQRYSRGSGSSSG
                       W+ M+ + SNS G+  LK+  I D  + EEV ++  G+ S+S         SAL ++ +G+GK  NYN G+ + R  R       
Subjt:  --------------SWKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGK-MNYN-GKQQQRYSRGSGSSSG

Query:  EVECYYCHKKGHVKRFYRKFKEDFEKRNNSTNVVTEE
        ++EC+ C K GH+++  R+ K+  +  N+S NVVTEE
Subjt:  EVECYYCHKKGHVKRFYRKFKEDFEKRNNSTNVVTEE

A0A2N9IKQ5 Uncharacterized protein2.3e-2033.77Show/hide
Query:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKAL---------------------
        G+ KF   +F +W+MQ++D+L  KK+H   LGE+P  M D +W  +D Q +  +R++LS  V   V KE T  +L+ AL                     
Subjt:  GVLKFTRENFSFWKMQVKDFLTCKKIH-KTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKAL---------------------

Query:  ---QDSWKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGK-MNYN-GKQQQRYSRGSGSSSGEVECYYCHK
             SW+ M+ +VSNS G+  LK+  I D  + EEV ++  G+ S+S         SAL ++ +G+GK  NYN G+ + R  R       ++EC+ C K
Subjt:  ---QDSWKTMKTSVSNSLGENSLKFTAICDAAISEEVWKK-LGKMSASTSRVENEVESALVVQNKGKGK-MNYN-GKQQQRYSRGSGSSSGEVECYYCHK

Query:  KGHVKRFYRKFKEDFEKRNNSTNVVTEE
         GH+++   + K+  +  N+S NVVTEE
Subjt:  KGHVKRFYRKFKEDFEKRNNSTNVVTEE

A0A6J1DD48 cinnamoyl-CoA reductase-like SNL61.4e-2281.82Show/hide
Query:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR
        + DQKNLPS QVKQLRST+KGNENLIGHRVHTSAVR   ELVKSHRRISAL+GT S+SSVAT L GS KS GESSFR
Subjt:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR

A0A6J1DVE9 uncharacterized protein LOC1110238702.0e-2484.42Show/hide
Query:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR
        R DQKNLPSA VKQLRSTEKGNENLIGH+VHTSAVRRS ELVKSHRRISA +GT  VSSV TDLGGS KS GESSF+
Subjt:  RIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFR

A0A803L6Q2 Uncharacterized protein6.0e-2134.8Show/hide
Query:  KFTRENFSFWKMQVKDFLTCKKIHKTLGE-RPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKAL------------------------
        KF  ++F FWKMQ++D+L  KK+++ L E +P GM + +W  +D QA+  +R++LS NV   +AKETT   L+KAL                        
Subjt:  KFTRENFSFWKMQVKDFLTCKKIHKTLGE-RPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKAL------------------------

Query:  -QDSWKTMKTSVSNSLGENSLKFTAICDAAISEEVWKKLGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSG----SSSGEVECYYCHKK
         +DSW    TSVS+S G N LKF    D  +SEE+ ++    S+S+S +  E     +++   +G+ NY G+ + R S+        +S  VEC+ C K 
Subjt:  -QDSWKTMKTSVSNSLGENSLKFTAICDAAISEEVWKKLGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSG----SSSGEVECYYCHKK

Query:  GHVK
        GH K
Subjt:  GHVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29785.1 unknown protein6.8e-0935.29Show/hide
Query:  NFSFWKMQVKDFLTCKKIHKTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQDSWKTMKTSVSNSL
        ++SF +M+++D+L  KK+H+ LG++   M+  DWN +  Q +  +R+++S N+   VAKE +   L+K L D +K  K S +N++
Subjt:  NFSFWKMQVKDFLTCKKIHKTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQDSWKTMKTSVSNSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACAAATATCACGCACACTATTACTATGAAGGGGTTTTGAAATTCACTAGAGAGAATTTCAGCTTTTGGAAGATGCAGGTAAAGGATTTTCTTACGTGCAAGAA
GATACACAAGACTTTAGGGGAGAGACCAGCAGGGATGACTGATAAGGATTGGAATGAGATGGATGAGCAAGCTGTTGCGAACATGAGAATGTCGTTGTCGATGAATGTTT
GTAGTCTGGTGGCGAAAGAGACTACAGCGAAAGATTTATTGAAGGCCTTGCAAGACAGTTGGAAGACGATGAAGACCTCAGTGTCAAATTCACTAGGGGAAAATAGCTTG
AAATTTACAGCCATTTGTGATGCCGCCATATCTGAAGAAGTCTGGAAAAAATTAGGGAAAATGTCTGCATCTACTTCAAGGGTAGAAAACGAGGTTGAATCAGCTTTGGT
AGTTCAAAACAAAGGGAAGGGCAAGATGAATTACAATGGGAAGCAGCAACAGAGATATAGTAGGGGTAGTGGGAGTTCCAGTGGAGAAGTAGAGTGTTATTACTGCCACA
AAAAGGGACACGTGAAACGTTTCTATAGAAAGTTCAAAGAAGATTTTGAAAAGAGGAACAATTCTACAAACGTTGTAACAGAAGAAGAACAGATTGAGGAGTTTCTAGCT
TGTGGTGGTGGCAACATGCCACAAGAGATCTTCTGTTTATGTGTCAGAGTTTGGGGTTGCCAAAGAATAGATCAGAAGAATCTGCCATCAGCTCAAGTTAAACAGTTGAG
AAGTACAGAAAAGGGAAACGAGAATTTGATAGGCCATCGAGTTCATACCTCAGCTGTCAGACGTTCAAGCGAGCTGGTGAAGTCGCATAGGCGAATTAGTGCATTGGAGG
GTACGAGTTCTGTTTCTAGTGTGGCAACAGACTTGGGTGGGAGCCCCAAGTCATTAGGGGAATCTTCCTTTAGAGTCGTTGAGTTCGATCGAGAAAGGAAGCGATGGGGA
TCACTTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACAAATATCACGCACACTATTACTATGAAGGGGTTTTGAAATTCACTAGAGAGAATTTCAGCTTTTGGAAGATGCAGGTAAAGGATTTTCTTACGTGCAAGAA
GATACACAAGACTTTAGGGGAGAGACCAGCAGGGATGACTGATAAGGATTGGAATGAGATGGATGAGCAAGCTGTTGCGAACATGAGAATGTCGTTGTCGATGAATGTTT
GTAGTCTGGTGGCGAAAGAGACTACAGCGAAAGATTTATTGAAGGCCTTGCAAGACAGTTGGAAGACGATGAAGACCTCAGTGTCAAATTCACTAGGGGAAAATAGCTTG
AAATTTACAGCCATTTGTGATGCCGCCATATCTGAAGAAGTCTGGAAAAAATTAGGGAAAATGTCTGCATCTACTTCAAGGGTAGAAAACGAGGTTGAATCAGCTTTGGT
AGTTCAAAACAAAGGGAAGGGCAAGATGAATTACAATGGGAAGCAGCAACAGAGATATAGTAGGGGTAGTGGGAGTTCCAGTGGAGAAGTAGAGTGTTATTACTGCCACA
AAAAGGGACACGTGAAACGTTTCTATAGAAAGTTCAAAGAAGATTTTGAAAAGAGGAACAATTCTACAAACGTTGTAACAGAAGAAGAACAGATTGAGGAGTTTCTAGCT
TGTGGTGGTGGCAACATGCCACAAGAGATCTTCTGTTTATGTGTCAGAGTTTGGGGTTGCCAAAGAATAGATCAGAAGAATCTGCCATCAGCTCAAGTTAAACAGTTGAG
AAGTACAGAAAAGGGAAACGAGAATTTGATAGGCCATCGAGTTCATACCTCAGCTGTCAGACGTTCAAGCGAGCTGGTGAAGTCGCATAGGCGAATTAGTGCATTGGAGG
GTACGAGTTCTGTTTCTAGTGTGGCAACAGACTTGGGTGGGAGCCCCAAGTCATTAGGGGAATCTTCCTTTAGAGTCGTTGAGTTCGATCGAGAAAGGAAGCGATGGGGA
TCACTTAGATAA
Protein sequenceShow/hide protein sequence
MGDKYHAHYYYEGVLKFTRENFSFWKMQVKDFLTCKKIHKTLGERPAGMTDKDWNEMDEQAVANMRMSLSMNVCSLVAKETTAKDLLKALQDSWKTMKTSVSNSLGENSL
KFTAICDAAISEEVWKKLGKMSASTSRVENEVESALVVQNKGKGKMNYNGKQQQRYSRGSGSSSGEVECYYCHKKGHVKRFYRKFKEDFEKRNNSTNVVTEEEQIEEFLA
CGGGNMPQEIFCLCVRVWGCQRIDQKNLPSAQVKQLRSTEKGNENLIGHRVHTSAVRRSSELVKSHRRISALEGTSSVSSVATDLGGSPKSLGESSFRVVEFDRERKRWG
SLR