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Moc10g15580 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g15580
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr10:11869109..11869569
RNA-Seq ExpressionMoc10g15580
SyntenyMoc10g15580
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

KAA0046844.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3273.11Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  PSSSG+K +KKKK  G+G+K + AAT T K KAKVA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEGN
        WKRNCPKYLAEKKKA +GN
Subjt:  WKRNCPKYLAEKKKANEGN

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.0e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

A0A5A7TU93 Gag/pol protein1.0e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

A0A5A7TWB9 Gag/pol protein1.0e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

A0A5A7V4M1 Gag/pol protein1.0e-3172.03Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +KKKK  G+G+K + AA  T K KAK A KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEG
        WKRNCPKYLAEKKKA +G
Subjt:  WKRNCPKYLAEKKKANEG

A0A5D3C269 Gag/pol protein9.2e-3373.11Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  PSSSG+K +KKKK  G+G+K + AAT T K KAKVA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGH

Query:  WKRNCPKYLAEKKKANEGN
        WKRNCPKYLAEKKKA +GN
Subjt:  WKRNCPKYLAEKKKANEGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAGAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAA
AAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCGGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCG
CTGCTACCGCTACCAAGAAATGTAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCATTGTAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCTGAA
AAGAAGAAAGCCAACGAAGGGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAGAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAA
AAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCGGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCG
CTGCTACCGCTACCAAGAAATGTAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCATTGTAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCTGAA
AAGAAGAAAGCCAACGAAGGGAATTAG
Protein sequenceShow/hide protein sequence
MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATSKRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAE
KKKANEGN