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Moc10g23780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc10g23780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr10:17096093..17101987
RNA-Seq ExpressionMoc10g23780
SyntenyMoc10g23780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]1.4e-0670.73Show/hide
Query:  LSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        +SL R  + PTQY+YHFGDKTEWGA N  TQD IHSFP LG
Subjt:  LSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]8.1e-0778.38Show/hide
Query:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        R  K PTQY+YHFGDKT+WGA NI TQDEIHSF TLG
Subjt:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-0676.32Show/hide
Query:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGL
        R  K  TQY+YHFGDKTEWGAENI TQD IHSFP LG+
Subjt:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGL
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.3e-0675.68Show/hide
Query:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        R  + PTQY+YHFGDKTEWGA NI TQD IHSFP LG
Subjt:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
TYK19425.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-0684.38Show/hide
Query:  PTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        PTQY+YHFGDKTEWGA NITTQD IH FP LG
Subjt:  PTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class6.7e-0770.73Show/hide
Query:  LSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        +SL R  + PTQY+YHFGDKTEWGA N  TQD IHSFP LG
Subjt:  LSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
A0A5A7THR9 Uncharacterized protein3.9e-0778.38Show/hide
Query:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        R  K PTQY+YHFGDKT+WGA NI TQDEIHSF TLG
Subjt:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
A0A5A7VFG5 Ty1-copia retrotransposon protein1.1e-0675.68Show/hide
Query:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        R  + PTQY+YHFGDKTEWGA NI TQD IHSFP LG
Subjt:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
A0A5D3C1P5 Gag-pol polyprotein5.1e-0776.32Show/hide
Query:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGL
        R  K  TQY+YHFGDKTEWGAENI TQD IHSFP LG+
Subjt:  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGL
A0A5D3D7C0 Gag/pol protein1.5e-0684.38Show/hide
Query:  PTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
        PTQY+YHFGDKTEWGA NITTQD IH FP LG
Subjt:  PTQYSYHFGDKTEWGAENITTQDEIHSFPTLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATCCTATGAGATGCGATGGAGGCTGCCAGTGAAATGTTTTACAAACAAAGGAGAAGAAGCCGTCGGAGACAACGAAGACGTCGACGAGATGCTTCAGAGGAGACG
AAGCCCGATGGATCAAATCACTAAATCCAATTCCTCTCGGGCCAGTGAGAGGATGGGGCCCCTTGTTCAAGATCCAGGATCAGCTCTTAAGGGAACAACCTCTCTACTAT
CCTTAAATCGGTGGCCTAAGTCGCCGACTCAATATTCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGAGAACATAACTACACAAGATGAAATTCACTCCTTCCCA
ACTTTAGGATTGAAGCACACGCGTTCGCGCACTTCCGCTGTAGGATCCGATCTCTTCACCGCAGCATCCACAGCTCGTGCATGCTTGCACTCGCGCCCCCACCTGCTGCC
AACGCACACGCGTGCCCCAGCCTTGCCAGCGCCCACACACTTCCACCATGCTAACCTCACAAGAGGCCATCGCCATCGCCAGTACGCGCGCCTGTCGGATGCCTGCCTAT
CGCCTAGCGACCACACTCGCGCGTCCTTCCTGCCACTAGCGTGCCCTTACCTCGCCAACCTCACAGCACCCTCGACCGTGCAACCACGCGCATCACTGTCGTGCCAACCT
CCCAGCATGGCCCTATTGCGTGCGCCGCACGCCCCTGTATCGCGCTCACGTCTCACCTATCGCCAAACACCCATGCCCTGGCACCTCTGCTCAGCGCCACGCATTTGCCC
ACTTAGCGCCATGCGCATACCCCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTATCCTATGAGATGCGATGGAGGCTGCCAGTGAAATGTTTTACAAACAAAGGAGAAGAAGCCGTCGGAGACAACGAAGACGTCGACGAGATGCTTCAGAGGAGACG
AAGCCCGATGGATCAAATCACTAAATCCAATTCCTCTCGGGCCAGTGAGAGGATGGGGCCCCTTGTTCAAGATCCAGGATCAGCTCTTAAGGGAACAACCTCTCTACTAT
CCTTAAATCGGTGGCCTAAGTCGCCGACTCAATATTCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGAGAACATAACTACACAAGATGAAATTCACTCCTTCCCA
ACTTTAGGATTGAAGCACACGCGTTCGCGCACTTCCGCTGTAGGATCCGATCTCTTCACCGCAGCATCCACAGCTCGTGCATGCTTGCACTCGCGCCCCCACCTGCTGCC
AACGCACACGCGTGCCCCAGCCTTGCCAGCGCCCACACACTTCCACCATGCTAACCTCACAAGAGGCCATCGCCATCGCCAGTACGCGCGCCTGTCGGATGCCTGCCTAT
CGCCTAGCGACCACACTCGCGCGTCCTTCCTGCCACTAGCGTGCCCTTACCTCGCCAACCTCACAGCACCCTCGACCGTGCAACCACGCGCATCACTGTCGTGCCAACCT
CCCAGCATGGCCCTATTGCGTGCGCCGCACGCCCCTGTATCGCGCTCACGTCTCACCTATCGCCAAACACCCATGCCCTGGCACCTCTGCTCAGCGCCACGCATTTGCCC
ACTTAGCGCCATGCGCATACCCCGTTAG
Protein sequenceShow/hide protein sequence
MLSYEMRWRLPVKCFTNKGEEAVGDNEDVDEMLQRRRSPMDQITKSNSSRASERMGPLVQDPGSALKGTTSLLSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFP
TLGLKHTRSRTSAVGSDLFTAASTARACLHSRPHLLPTHTRAPALPAPTHFHHANLTRGHRHRQYARLSDACLSPSDHTRASFLPLACPYLANLTAPSTVQPRASLSCQP
PSMALLRAPHAPVSRSRLTYRQTPMPWHLCSAPRICPLSAMRIPR