; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g00280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g00280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionAT-rich interactive domain-containing protein 6
Genome locationchr11:232965..233869
RNA-Seq ExpressionMoc11g00280
SyntenyMoc11g00280
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001606 - ARID DNA-binding domain
IPR036431 - ARID DNA-binding domain superfamily
IPR045147 - AT-rich interactive domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608660.1 AT-rich interactive domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]8.0e-4261.11Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN---TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRT
        +ACP F+DV+ H+ PCL KPI+DD D+ DH  V     AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN---TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRT

Query:  DIEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        DIEMAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  DIEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

XP_022941346.1 AT-rich interactive domain-containing protein 6 isoform X1 [Cucurbita moschata]8.8e-4160.87Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD
        +ACP F+DV+ H+ PCL K I+DD D+ DH  V    AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   D
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD

Query:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        IEMAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

XP_022941348.1 AT-rich interactive domain-containing protein 6 isoform X2 [Cucurbita moschata]8.8e-4160.87Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD
        +ACP F+DV+ H+ PCL K I+DD D+ DH  V    AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   D
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD

Query:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        IEMAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

XP_023525687.1 AT-rich interactive domain-containing protein 5 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-4262.5Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN-TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTDI
        +ACP F+DV+ H+ PCL KPI+DD D+ DH  V   AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   DI
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN-TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTDI

Query:  EMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        EMAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  EMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

XP_023525688.1 AT-rich interactive domain-containing protein 5 isoform X2 [Cucurbita pepo subsp. pepo]1.2e-4262.5Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN-TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTDI
        +ACP F+DV+ H+ PCL KPI+DD D+ DH  V   AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   DI
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN-TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTDI

Query:  EMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        EMAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  EMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

TrEMBL top hitse value%identityAlignment
A0A2P2KFL3 Transcription factor6.4e-2152.1Show/hide
Query:  HPDVNTAADARVIE-----------DNPS-APPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEP
        H + N A D +V E           + P    P+       P A+++S    K+V TDIEM EADESGTPE+R AFMKE+E FHR+ A     PKFYGEP
Subjt:  HPDVNTAADARVIE-----------DNPS-APPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEP

Query:  LNCLKLWRAVIRLGGYDVV
        LNCLKLWRAVI+LGGY+VV
Subjt:  LNCLKLWRAVIRLGGYDVV

A0A6J1FKV6 AT-rich interactive domain-containing protein 6 isoform X14.3e-4160.87Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD
        +ACP F+DV+ H+ PCL K I+DD D+ DH  V    AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   D
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD

Query:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        IEMAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

A0A6J1FRV5 AT-rich interactive domain-containing protein 6 isoform X24.3e-4160.87Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD
        +ACP F+DV+ H+ PCL K I+DD D+ DH  V    AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   D
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN--TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTD

Query:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        IEMAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  IEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

A0A6J1J3M7 AT-rich interactive domain-containing protein 69.5e-4161.88Show/hide
Query:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN-TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTDI
        +ACP F+D   H+ PCL KPI+DD D+ DH  V   AADA+V+                       EDNPSAPP+S +ISLP NA N+SA  +KN   DI
Subjt:  TACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVN-TAADARVI-----------------------EDNPSAPPVSFEISLPPNAENKSATTMKNVRTDI

Query:  EMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        EMAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLKLWRAVIRLGGYDVV
Subjt:  EMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

B9R8U2 Transcription factor, putative6.4e-2156.57Show/hide
Query:  VIEDNPSA---PPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV
        ++ D P A    P++      P A+++S    K V TD+EM EADESGTPE+R AFM+E+E FH+E A     PKFYGEPLNCLKLWR+VIRLGGY+VV
Subjt:  VIEDNPSA---PPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLKLWRAVIRLGGYDVV

SwissProt top hitse value%identityAlignment
C0SUW7 AT-rich interactive domain-containing protein 61.3e-1549.4Show/hide
Query:  LPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYDVVDMN
        L P  E ++A   K    D E    DE+GTP ++VAF++E+E F++E     + PKFYG+PLN LKLWRAV+ LGGY+VV  N
Subjt:  LPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYDVVDMN

Q0WNR6 AT-rich interactive domain-containing protein 59.2e-1747.06Show/hide
Query:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD
        T  ++  ++ +PS+P V      P  +  K  T +    +D E  E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLKLWRAVI+LGGYD
Subjt:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD

Query:  VV
        VV
Subjt:  VV

Q940Y3 AT-rich interactive domain-containing protein 37.3e-1463.33Show/hide
Query:  EMAEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLKLWRAVIRLGGYDVV
        + ++ +ESGT ED+ AFMKE+++F RER      PKFYGE LNCLKLWRAV RLGGYD V
Subjt:  EMAEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLKLWRAVIRLGGYDVV

Arabidopsis top hitse value%identityAlignment
AT1G20910.1 ARID/BRIGHT DNA-binding domain-containing protein9.4e-1749.4Show/hide
Query:  LPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYDVVDMN
        L P  E ++A   K    D E    DE+GTP ++VAF++E+E F++E     + PKFYG+PLN LKLWRAV+ LGGY+VV  N
Subjt:  LPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYDVVDMN

AT1G76510.1 ARID/BRIGHT DNA-binding domain-containing protein6.5e-1847.06Show/hide
Query:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD
        T  ++  ++ +PS+P V      P  +  K  T +    +D E  E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLKLWRAVI+LGGYD
Subjt:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD

Query:  VV
        VV
Subjt:  VV

AT1G76510.2 ARID/BRIGHT DNA-binding domain-containing protein6.5e-1847.06Show/hide
Query:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD
        T  ++  ++ +PS+P V      P  +  K  T +    +D E  E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLKLWRAVI+LGGYD
Subjt:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD

Query:  VV
        VV
Subjt:  VV

AT1G76510.3 ARID/BRIGHT DNA-binding domain-containing protein6.5e-1847.06Show/hide
Query:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD
        T  ++  ++ +PS+P V      P  +  K  T +    +D E  E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLKLWRAVI+LGGYD
Subjt:  TAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLKLWRAVIRLGGYD

Query:  VV
        VV
Subjt:  VV

AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein5.2e-1563.33Show/hide
Query:  EMAEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLKLWRAVIRLGGYDVV
        + ++ +ESGT ED+ AFMKE+++F RER      PKFYGE LNCLKLWRAV RLGGYD V
Subjt:  EMAEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLKLWRAVIRLGGYDVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATAGCGCGATAACGCGGGGCAAGATTTGCCCCACGGCCTGCCCTGAGTTTGACGATGTCAAAATTCATGATCATCCATGTCTTCTAAAACCGATCGACGATGA
TCACGATATGCTTGATCACCCTGATGTCAACACTGCTGCTGATGCACGAGTTATCGAGGATAATCCTTCTGCACCACCCGTTTCATTTGAGATCTCTCTGCCTCCAAATG
CTGAAAATAAGAGTGCGACAACCATGAAGAATGTGCGGACTGATATCGAAATGGCCGAAGCTGATGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAGATT
GAGAATTTCCATAGGGAGAGGGCTCCTAAGTTCTATGGGGAGCCACTAAATTGTTTGAAGTTATGGAGAGCTGTCATTAGATTGGGCGGCTATGATGTGGTAGATATGAA
CTGCTACATAATGAGTTTTTTTTTTTTTTTTTATATATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGATAGCGCGATAACGCGGGGCAAGATTTGCCCCACGGCCTGCCCTGAGTTTGACGATGTCAAAATTCATGATCATCCATGTCTTCTAAAACCGATCGACGATGA
TCACGATATGCTTGATCACCCTGATGTCAACACTGCTGCTGATGCACGAGTTATCGAGGATAATCCTTCTGCACCACCCGTTTCATTTGAGATCTCTCTGCCTCCAAATG
CTGAAAATAAGAGTGCGACAACCATGAAGAATGTGCGGACTGATATCGAAATGGCCGAAGCTGATGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAGATT
GAGAATTTCCATAGGGAGAGGGCTCCTAAGTTCTATGGGGAGCCACTAAATTGTTTGAAGTTATGGAGAGCTGTCATTAGATTGGGCGGCTATGATGTGGTAGATATGAA
CTGCTACATAATGAGTTTTTTTTTTTTTTTTTATATATTATGA
Protein sequenceShow/hide protein sequence
MNDSAITRGKICPTACPEFDDVKIHDHPCLLKPIDDDHDMLDHPDVNTAADARVIEDNPSAPPVSFEISLPPNAENKSATTMKNVRTDIEMAEADESGTPEDRVAFMKEI
ENFHRERAPKFYGEPLNCLKLWRAVIRLGGYDVVDMNCYIMSFFFFFYIL