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Moc11g01880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g01880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RADIALIS-like 4
Genome locationchr11:1218388..1222224
RNA-Seq ExpressionMoc11g01880
SyntenyMoc11g01880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]4.1e-3087.65Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]4.1e-3087.65Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]1.8e-3396.3Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]1.1e-3090.36Show/hide
Query:  MASSSVTS-ARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSL
        MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPL+ ++
Subjt:  MASSSVTS-ARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSL

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]2.0e-2986.59Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSL
        MASSS T+A GFYSSWTKRENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELL RDV KIEAGQVQIPL+ ++
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSL

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein2.0e-3087.65Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

A0A1S3CRN8 protein RADIALIS-like 42.0e-3087.65Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

A0A5A7TE80 Protein RADIALIS-like 32.0e-3087.65Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

A0A6J1DP29 protein RADIALIS-like 48.6e-3496.3Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPL+ +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

A0A6J1FCU5 protein RADIALIS-like 35.2e-3190.36Show/hide
Query:  MASSSVTS-ARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSL
        MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPL+ ++
Subjt:  MASSSVTS-ARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.3e-1455.84Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP
        MASSS++S      SWT ++NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELL +D+  IE G V  P
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP

Q1G3C4 Protein RADIALIS-like 44.3e-1456.96Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLF
        MASSS+++     SSWT RE+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL RDV  IE+G+   P +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLF

Q6NNN0 Protein RADIALIS-like 37.8e-1660.49Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS
        MAS+S++S+    +SWT++ENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL RDV  IE+G+   P + S
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSS

Q8GW75 Protein RADIALIS-like 53.6e-1345.83Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSLTLTMADL
        MASSS++S+    SSWT ++NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++L  D+  IE   V +P + ++ +   S  +   DL
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSLTLTMADL

Q9SIJ5 Protein RADIALIS-like 28.6e-1559.74Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP
        MAS S++S      SWT ++NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LL RD++ IE G V  P
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.6e-1445.83Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSLTLTMADL
        MASSS++S+    SSWT ++NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++L  D+  IE   V +P + ++ +   S  +   DL
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSLTLTMADL

AT1G75250.1 RAD-like 62.8e-1345.78Show/hide
Query:  TSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSL
        +++R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++L  D+  IE G+V +P + +   +  S+
Subjt:  TSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSL

AT2G18328.1 RAD-like 43.0e-1556.96Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLF
        MASSS+++     SSWT RE+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL RDV  IE+G+   P +
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLF

AT2G21650.1 Homeodomain-like superfamily protein6.1e-1659.74Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP
        MAS S++S      SWT ++NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LL RD++ IE G V  P
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP

AT4G39250.1 RAD-like 15.2e-1555.84Show/hide
Query:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP
        MASSS++S      SWT ++NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELL +D+  IE G V  P
Subjt:  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCCGTCACGTCAGCACGTGGCTTTTACTCGTCCTGGACAAAAAGAGAGAACAAGAAATTTGAGGAGGCATTGGCCTTCTATGACCAGGACACACCAGA
CCGGTTCGAGAAAGTAGCGAGGGCGGTTGGTGGGGGGAAGACAGCTGAGGAAGCAAGAAGGCTGTATGAGTTGCTAGAGCGAGATGTCAAAAAAATTGAAGCTGGTCAAG
TCCAAATACCCCTCTTTTCCTCTCTATCTCTCTCTCCATCATCGTTAACATTAACCATGGCGGATCTGTACGGCTCCATCACTGTTATCAGCGCCGCCGTTGGGGAGCCT
CGTCCTTCCGGCTCTTCTGCAGATTATTCCGGTATTTGGATCGGAACTGTTGGCGTCGGCGGCCTCCGATGCTGCTTTAATGGCGGAGATTCAGAGAGCATTTTCTTCCA
TCCTGAACTTGTACCAAAAGTTGGTACAAATTTGATTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCCGTCACGTCAGCACGTGGCTTTTACTCGTCCTGGACAAAAAGAGAGAACAAGAAATTTGAGGAGGCATTGGCCTTCTATGACCAGGACACACCAGA
CCGGTTCGAGAAAGTAGCGAGGGCGGTTGGTGGGGGGAAGACAGCTGAGGAAGCAAGAAGGCTGTATGAGTTGCTAGAGCGAGATGTCAAAAAAATTGAAGCTGGTCAAG
TCCAAATACCCCTCTTTTCCTCTCTATCTCTCTCTCCATCATCGTTAACATTAACCATGGCGGATCTGTACGGCTCCATCACTGTTATCAGCGCCGCCGTTGGGGAGCCT
CGTCCTTCCGGCTCTTCTGCAGATTATTCCGGTATTTGGATCGGAACTGTTGGCGTCGGCGGCCTCCGATGCTGCTTTAATGGCGGAGATTCAGAGAGCATTTTCTTCCA
TCCTGAACTTGTACCAAAAGTTGGTACAAATTTGATTGAATGA
Protein sequenceShow/hide protein sequence
MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLERDVKKIEAGQVQIPLFSSLSLSPSSLTLTMADLYGSITVISAAVGEP
RPSGSSADYSGIWIGTVGVGGLRCCFNGGDSESIFFHPELVPKVGTNLIE