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Moc11g03560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g03560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr11:2288449..2290817
RNA-Seq ExpressionMoc11g03560
SyntenyMoc11g03560
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]3.6e-1887.93Show/hide
Query:  GEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLG
        GEPV GL KATDLSGEARPSPGHRLNSTTLDRG  AEEVESVPLT E++RVNIGTKLG
Subjt:  GEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLG

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]1.1e-6497.69Show/hide
Query:  MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNST
        MNPDESHRCFEEKSLK+AADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKG PVAGLIKATDLSG+ARPSPGHRLNST
Subjt:  MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNST

Query:  TLDRGEPAEEVESVPLTAEDRRVNIGTKLG
        TLDRGEPAEEVESVPLTAEDRRVNIGTKLG
Subjt:  TLDRGEPAEEVESVPLTAEDRRVNIGTKLG

XP_022158042.1 uncharacterized protein LOC111024621 [Momordica charantia]1.7e-1544.96Show/hide
Query:  NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTT
        NP E  +CFEE+SL+ AA+ L E  PSPD Q NPTT D GEPV G+                           P+    +A D  GE   SP    + T 
Subjt:  NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTT

Query:  LDRGEPAEEVESVPLTAEDRRVNIGTKLG
         DRGEP +EVES+PLT++DRRVNIGT+LG
Subjt:  LDRGEPAEEVESVPLTAEDRRVNIGTKLG

TrEMBL top hitse value%identityAlignment
A0A6J1DPJ5 uncharacterized protein LOC1110230161.7e-1887.93Show/hide
Query:  GEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLG
        GEPV GL KATDLSGEARPSPGHRLNSTTLDRG  AEEVESVPLT E++RVNIGTKLG
Subjt:  GEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLG

A0A6J1DVC6 Ribonuclease H5.5e-6597.69Show/hide
Query:  MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNST
        MNPDESHRCFEEKSLK+AADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKG PVAGLIKATDLSG+ARPSPGHRLNST
Subjt:  MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNST

Query:  TLDRGEPAEEVESVPLTAEDRRVNIGTKLG
        TLDRGEPAEEVESVPLTAEDRRVNIGTKLG
Subjt:  TLDRGEPAEEVESVPLTAEDRRVNIGTKLG

A0A6J1DW49 uncharacterized protein LOC1110246218.1e-1644.96Show/hide
Query:  NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTT
        NP E  +CFEE+SL+ AA+ L E  PSPD Q NPTT D GEPV G+                           P+    +A D  GE   SP    + T 
Subjt:  NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTT

Query:  LDRGEPAEEVESVPLTAEDRRVNIGTKLG
         DRGEP +EVES+PLT++DRRVNIGT+LG
Subjt:  LDRGEPAEEVESVPLTAEDRRVNIGTKLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCAC
CCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAG
AACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAG
GTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGA
GCCCTTTGATCAAATGTTTGAAAGATGGGATCCTGCCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCAC
CCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAG
AACCAGTGGCGGGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAG
GTAGAATCTGTCCCTCTGACAGCCGAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGA
GCCCTTTGATCAAATGTTTGAAAGATGGGATCCTGCCTACTGA
Protein sequenceShow/hide protein sequence
MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKATDLSGEARPSPGHRLNSTTLDRGEPAEE
VESVPLTAEDRRVNIGTKLGRSHGYRQSRATRRKLEEPFDQMFERWDPAY