; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g10070 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g10070
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNA exonuclease 4
Genome locationchr11:7247721..7250286
RNA-Seq ExpressionMoc11g10070
SyntenyMoc11g10070
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649831.1 hypothetical protein Csa_012901 [Cucumis sativus]2.6e-11483.4Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWALLQQKL  H S H   + V K + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGK++VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGG
        EFL VEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGG
Subjt:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGG

XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]8.1e-11683.52Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWALLQQKL  H S H   + V K + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGK++VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFL VEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]9.2e-12084.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWA+LQQKLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGV+IQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_022139347.1 RNA exonuclease 4 [Momordica charantia]8.3e-145100Show/hide
Query:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
        MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
Subjt:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG

Query:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
        RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
Subjt:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR

Query:  HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
Subjt:  HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]2.1e-11684.03Show/hide
Query:  QPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRV
        + QLK + KPK +NPNWALLQQKLK   S H R S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TDVVAMDCEMVGVGQGN+SALGRV
Subjt:  QPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRV

Query:  TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHL
        TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQK+VA+LIKGKI+VGHAL ND KALLLSHPK+D+RDTSEYQFFQKEGCRRALRHL
Subjt:  TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHL

Query:  AAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        AAEFLGVEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K E+KLKLKQKKRK RKKSKDGGGF
Subjt:  AAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 43.9e-11683.52Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWALLQQKL  H S H   + V K + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGK++VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFL VEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A1S3CJW0 RNA exonuclease 44.5e-12084.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWA+LQQKLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGV+IQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A6J1CDP9 RNA exonuclease 44.0e-145100Show/hide
Query:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
        MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
Subjt:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG

Query:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
        RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
Subjt:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR

Query:  HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
Subjt:  HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A6J1FBB2 RNA exonuclease 41.4e-11382.06Show/hide
Query:  QPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRV
        + QLK S KPK +NPNWALLQQKL  H SK  R S+VPK + +S ++LGKRK+RSD +S  S+K LLIPVNDDFS+TDVVAMDCEMVGVGQGN+SALGRV
Subjt:  QPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRV

Query:  TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHL
        T+VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQK+VA+LIKG+I+VGHAL ND KALLLSHPKKD+RDTSEYQFFQ+ GCRRALRHL
Subjt:  TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHL

Query:  AAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGG
        AAE LGVEIQNGEHCP+EDARSAMLLYQKK KEWEKS+K+E+KLKLKQKKRKPRKKSKDGGG
Subjt:  AAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGG

E5GBF8 RNA exonuclease 44.5e-12084.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWA+LQQKLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGV+IQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 45.7e-4050Show/hide
Query:  NDDFSVTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKA
        N    +   +AMDCE VGVG +G  SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K A  F   QKK AD+++G+I+VGHAL +D +A
Subjt:  NDDFSVTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKA

Query:  LLLSHPKKDLRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK
        L+LSHPK  LRDTS +  F+K   +G   +L+ L  E L + IQ GEH  +EDAR+ MLLY+K++ E+EK
Subjt:  LLLSHPKKDLRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 43.4e-4046.45Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  VAMDCEMVGVG  G  S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D+K  + F  VQ +VA++++G+ +VGHA+ ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC ++DA++AM LY  ++K WE ++K++       K + P+K
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRK

Q6PAQ4 RNA exonuclease 43.0e-4147.88Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  +A+DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++F  V+K+VA+++KG+I+VGHAL ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKS
        PKK +RDT +++ F+   +  R +L+ L+ + LG+ +Q  EHC I+DA++AM LY   ++EWE S
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 45.2e-4145.95Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  VAMDCEMVGVG  G  S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D+KK + F  VQK+V+++++G+ +VGHA+ ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMK--LKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC ++DA++AM LY  ++K WE ++K++    + + +K + P+K
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 42.3e-4148.26Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  +A+DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++   VQK+VA+++KG+I+VGHAL ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKL
        PKK +RDT +Y+ F  Q +  R +LR L+ + LG+++Q  EHC I+DA++AM LY   +KEWE   +    L
Subjt:  PKKDLRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKL

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein2.2e-1835.37Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH L +D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE

AT2G48100.2 Exonuclease family protein2.2e-1835.37Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH L +D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE

AT2G48100.3 Exonuclease family protein2.2e-1835.37Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH L +D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.6e-9266.41Show/hide
Query:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
        ++ +P+ K +PKP Q+NPNW+LLQQKLKS +  + R S+ P  +  +S+LGKRKER D +      N L PVNDD S+TD VAMDCEMVGV QG +SALG
Subjt:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG

Query:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
        RVTLVNKWGNV+YDEFVRP+E VVDFRT ISGIRP DL+KAKDF   Q KVA+LIKGKI+VGHAL ND KALLL+HPKKD+RDT EYQ F K   R++L+
Subjt:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR

Query:  HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDG
        HLA+E LG +IQNGEHCPI+DAR+AM+LYQK RKEWEK++K + ++ LKQKKRKP+KK+K G
Subjt:  HLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein1.7e-1831.61Show/hide
Query:  VVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLI--------------KGKIVVGHAL
        VVA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ A     VQ+K+ + +              K +I+VGH L
Subjt:  VVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLI--------------KGKIVVGHAL

Query:  CNDFKALLLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK
         +D   L L +P   +RDT++Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Subjt:  CNDFKALLLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTCAGCCTCAGCTCAAGAACAGCCCTAAACCGAAGCAGATGAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAAAGCCATGCTTCGAAGCATCCCAGGTT
CTCTAATGTTCCAAAATTCGATACTTCTAACTCTGTTTTGGGTAAACGCAAGGAAAGATCTGATGTGGACTCAATTCGTTCTGACAAGAATCTTCTCATTCCAGTGAACG
ATGACTTTAGTGTTACAGATGTAGTAGCCATGGATTGCGAAATGGTTGGTGTGGGTCAAGGTAACAGAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGAAAT
GTTATATATGACGAGTTTGTGCGACCCATAGAGCGCGTTGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCTGAAGAAAGCGAAGGATTTCCCAACAGT
CCAGAAGAAGGTTGCAGACTTGATTAAAGGAAAGATTGTCGTTGGCCATGCCTTGTGTAATGACTTTAAGGCATTGCTCTTAAGCCATCCCAAGAAAGATTTGAGAGACA
CCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTCCGCCATCTGGCAGCCGAGTTTCTTGGTGTCGAGATCCAAAATGGGGAGCATTGTCCTATAGAA
GATGCTCGATCTGCAATGCTGCTGTATCAGAAGAAAAGGAAAGAGTGGGAAAAGAGTCTCAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCTAGGAA
GAAATCCAAGGATGGAGGTGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCTCAGCCTCAGCTCAAGAACAGCCCTAAACCGAAGCAGATGAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAAAGCCATGCTTCGAAGCATCCCAGGTT
CTCTAATGTTCCAAAATTCGATACTTCTAACTCTGTTTTGGGTAAACGCAAGGAAAGATCTGATGTGGACTCAATTCGTTCTGACAAGAATCTTCTCATTCCAGTGAACG
ATGACTTTAGTGTTACAGATGTAGTAGCCATGGATTGCGAAATGGTTGGTGTGGGTCAAGGTAACAGAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGAAAT
GTTATATATGACGAGTTTGTGCGACCCATAGAGCGCGTTGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCTGAAGAAAGCGAAGGATTTCCCAACAGT
CCAGAAGAAGGTTGCAGACTTGATTAAAGGAAAGATTGTCGTTGGCCATGCCTTGTGTAATGACTTTAAGGCATTGCTCTTAAGCCATCCCAAGAAAGATTTGAGAGACA
CCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTCCGCCATCTGGCAGCCGAGTTTCTTGGTGTCGAGATCCAAAATGGGGAGCATTGTCCTATAGAA
GATGCTCGATCTGCAATGCTGCTGTATCAGAAGAAAAGGAAAGAGTGGGAAAAGAGTCTCAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCTAGGAA
GAAATCCAAGGATGGAGGTGGTTTTTGA
Protein sequenceShow/hide protein sequence
MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGN
VIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIE
DARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF