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Moc11g14380 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g14380
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr11:10663033..10669352
RNA-Seq ExpressionMoc11g14380
SyntenyMoc11g14380
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-1768Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+R+HKPRSKLVL E    ATDKSTRV+D+ GPS++VD   +TSG
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
KAA0026154.1 gag/pol protein [Cucumis melo var. makuwa]8.1e-1866.25Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEH
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+RDHKPRSKLVL E    ATD+STRV+D+ GPS++VD   +TSG +S H
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEH
KAA0034954.1 gag/pol protein [Cucumis melo var. makuwa]8.1e-1868Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+RDHKPRSKLVL E    ATD+STRV+D+ GPS++VD   +TSG
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
KAA0049915.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-1766.67Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+RDHKPRSKLVL E+    TD+STRV+D+ GPS++VD   +TSG
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
TYK09545.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-1850Show/hide
Query:  SRLHSKRYPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEHLRWESSCQNFVLL
        SRL    YPK TRGGLF+D Q+ +V +S NATFLEED++RDHKPRSKLVL E    ATD+STRV+D+ GPS++VD   ++       L   S C   V+ 
Subjt:  SRLHSKRYPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEHLRWESSCQNFVLL

Query:  QVGSSVRIVE
        Q    + + E
Subjt:  QVGSSVRIVE
TrEMBL top hitse value%identityAlignment
A0A5A7SIN2 Gag/pol protein5.1e-1868Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+R+HKPRSKLVL E    ATDKSTRV+D+ GPS++VD   +TSG
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
A0A5A7SKC5 Gag/pol protein3.9e-1866.25Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEH
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+RDHKPRSKLVL E    ATD+STRV+D+ GPS++VD   +TSG +S H
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEH
A0A5A7U8G7 Gag/pol protein5.1e-1866.67Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+RDHKPRSKLVL E+    TD+STRV+D+ GPS++VD   +TSG
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
A0A5D3CDF0 Gag/pol protein1.4e-1850Show/hide
Query:  SRLHSKRYPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEHLRWESSCQNFVLL
        SRL    YPK TRGGLF+D Q+ +V +S NATFLEED++RDHKPRSKLVL E    ATD+STRV+D+ GPS++VD   ++       L   S C   V+ 
Subjt:  SRLHSKRYPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEHLRWESSCQNFVLL

Query:  QVGSSVRIVE
        Q    + + E
Subjt:  QVGSSVRIVE
A0A5D3DDH0 Gag/pol protein3.9e-1868Show/hide
Query:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
        YPK TRGGLF+D Q+ +V +STNATFLEEDH+RDHKPRSKLVL E    ATD+STRV+D+ GPS++VD   +TSG
Subjt:  YPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTGGTTCTCTCGCGTTTACACTCTAAAAGATACCCTAAAGGAACGAGAGGTGGTCTGTTTTATGATCGTCAAGATGAAAAGGTAGTTATATCGACAAACGCCAC
ATTCCTAGAGGAAGACCACATACGAGATCATAAACCCCGCAGCAAACTAGTATTAGAAGAGATTTCAAAAGATGCTACAGATAAATCAACAAGAGTTATTGATCAGGCTG
GTCCATCAACAAAAGTTGATAATAGACCAAGCACATCTGGTCTAAAGTCGGAGCACTTGAGGTGGGAGTCAAGTTGTCAAAATTTCGTGTTATTGCAAGTGGGTAGCTCG
GTTCGGATTGTAGAGCTTTGCGCCCAACTACTGTACTGCGGGTTGTCGGAACTTGTGGTTGTCGGCGGACATGTGCAGCAGGAGTATTGTCGCCAGAGGTCGTTGGGCCT
ACCTGACGATGCCATGGGGTCGTTGGTGTGGGTGGAGAAGAAGAAAAGTCTAGTGAGAATTGATGTGGAGAAATTTGACGGAGGAATCAACTTCGACTTGTGGCAAGTGC
AAGTCAAGGACGTGCCTATACAATCTAGGTTACACAAGGCATTGAAGGGAAGACTGAGTGACGATGCTTTTGAAAAAGCTAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTGGTTCTCTCGCGTTTACACTCTAAAAGATACCCTAAAGGAACGAGAGGTGGTCTGTTTTATGATCGTCAAGATGAAAAGGTAGTTATATCGACAAACGCCAC
ATTCCTAGAGGAAGACCACATACGAGATCATAAACCCCGCAGCAAACTAGTATTAGAAGAGATTTCAAAAGATGCTACAGATAAATCAACAAGAGTTATTGATCAGGCTG
GTCCATCAACAAAAGTTGATAATAGACCAAGCACATCTGGTCTAAAGTCGGAGCACTTGAGGTGGGAGTCAAGTTGTCAAAATTTCGTGTTATTGCAAGTGGGTAGCTCG
GTTCGGATTGTAGAGCTTTGCGCCCAACTACTGTACTGCGGGTTGTCGGAACTTGTGGTTGTCGGCGGACATGTGCAGCAGGAGTATTGTCGCCAGAGGTCGTTGGGCCT
ACCTGACGATGCCATGGGGTCGTTGGTGTGGGTGGAGAAGAAGAAAAGTCTAGTGAGAATTGATGTGGAGAAATTTGACGGAGGAATCAACTTCGACTTGTGGCAAGTGC
AAGTCAAGGACGTGCCTATACAATCTAGGTTACACAAGGCATTGAAGGGAAGACTGAGTGACGATGCTTTTGAAAAAGCTAAGCAGTGA
Protein sequenceShow/hide protein sequence
MDVVLSRLHSKRYPKGTRGGLFYDRQDEKVVISTNATFLEEDHIRDHKPRSKLVLEEISKDATDKSTRVIDQAGPSTKVDNRPSTSGLKSEHLRWESSCQNFVLLQVGSS
VRIVELCAQLLYCGLSELVVVGGHVQQEYCRQRSLGLPDDAMGSLVWVEKKKSLVRIDVEKFDGGINFDLWQVQVKDVPIQSRLHKALKGRLSDDAFEKAKQ