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Moc11g15210 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g15210
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr11:11461999..11462839
RNA-Seq ExpressionMoc11g15210
SyntenyMoc11g15210
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.4e-2673.26Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M++DKP+M+ + EYENLVA+VL +G+KMCEI QANVLLEKFPPS  DYRNHLK KKKDL LQELISH+RT+EAN  KDKL+SQ++N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.4e-2673.26Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M++DKP+M+ + EYENLVA+VL +G+KMCEI QANVLLEKFPPS  DYRNHLK KKKDL LQELISH+RT+EAN  KDKL+SQ++N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
TYK23469.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.1e-2673.26Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M+ DKPI++ + EYENLVA+VL +G+KMCEI QANVLLEKFPPS  DYRNHLK KKKDL LQELISH+RT+EAN  KDKL+SQ++N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
XP_022156023.1 uncharacterized protein LOC111022991 [Momordica charantia]5.8e-2880.23Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        MS+DKP+MD V EYENLVASVLF+G+KMCEI QANVLLEKF PS  DYRNHL+ KKKDLTLQELISHV T+EAN  KDKLSSQS+N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
XP_022157709.1 uncharacterized protein LOC111024362 [Momordica charantia]2.2e-2774.42Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M+++KPIMD V E+ENLVA+VL +G+K+CE+FQAN LLEKFPPS  DYRNHLK KKK+LTLQELI+H+RT+EAN QKDKLSSQS+N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
TrEMBL top hitse value%identityAlignment
A0A5A7U9X9 Ty1-copia retrotransposon protein1.2e-2673.26Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M++DKP+M+ + EYENLVA+VL +G+KMCEI QANVLLEKFPPS  DYRNHLK KKKDL LQELISH+RT+EAN  KDKL+SQ++N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
A0A5D3BZI1 Ty1-copia retrotransposon protein1.2e-2673.26Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M++DKP+M+ + EYENLVA+VL +G+KMCEI QANVLLEKFPPS  DYRNHLK KKKDL LQELISH+RT+EAN  KDKL+SQ++N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
A0A5D3DJQ1 Ty1-copia retrotransposon protein2.0e-2673.26Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M+ DKPI++ + EYENLVA+VL +G+KMCEI QANVLLEKFPPS  DYRNHLK KKKDL LQELISH+RT+EAN  KDKL+SQ++N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
A0A6J1DPG7 uncharacterized protein LOC1110229912.8e-2880.23Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        MS+DKP+MD V EYENLVASVLF+G+KMCEI QANVLLEKF PS  DYRNHL+ KKKDLTLQELISHV T+EAN  KDKLSSQS+N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
A0A6J1DXB7 uncharacterized protein LOC1110243621.1e-2774.42Show/hide
Query:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
        M+++KPIMD V E+ENLVA+VL +G+K+CE+FQAN LLEKFPPS  DYRNHLK KKK+LTLQELI+H+RT+EAN QKDKLSSQS+N
Subjt:  MSNDKPIMDWVREYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATTTTGCTTTCAAGGCAGTGGTCTTGTCCACATGACAATGAAATTATTGCTCATGGTTCTATTTTTGTCCTTCTTTTCCAACAATTTGAAAGCAAAATTCTCAT
CATGGTTGCCATCGAATTTGGGAAGTTGGAGATCGACTACATCCACATTGGTGCCCAGCCTACTACCGTTGTTGTCACCACTGTGGCTGCCACCACCACTACTAAGCCCG
TCAACATTGTTGCTGCTCAATACACCGCCACTGCTTTAGCCGTCACGGTTGACTCCAGAACATCTTCTGCCATTATGTCAAATGACAAACCGATAATGGATTGGGTTCGT
GAGTATGAAAACCTGGTGGCAAGTGTGTTGTTTGATGGCATAAAGATGTGCGAGATTTTTCAAGCAAATGTGCTACTCGAGAAATTCCCTCCTTCTAGGATTGATTATCG
CAACCACCTGAAGCAGAAGAAGAAGGACCTGACTCTACAAGAACTTATCAGTCACGTTCGCACAAAGGAAGCCAACGAGCAAAAGGATAAGCTCTCTTCTCAATCCATAA
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAATTTTGCTTTCAAGGCAGTGGTCTTGTCCACATGACAATGAAATTATTGCTCATGGTTCTATTTTTGTCCTTCTTTTCCAACAATTTGAAAGCAAAATTCTCAT
CATGGTTGCCATCGAATTTGGGAAGTTGGAGATCGACTACATCCACATTGGTGCCCAGCCTACTACCGTTGTTGTCACCACTGTGGCTGCCACCACCACTACTAAGCCCG
TCAACATTGTTGCTGCTCAATACACCGCCACTGCTTTAGCCGTCACGGTTGACTCCAGAACATCTTCTGCCATTATGTCAAATGACAAACCGATAATGGATTGGGTTCGT
GAGTATGAAAACCTGGTGGCAAGTGTGTTGTTTGATGGCATAAAGATGTGCGAGATTTTTCAAGCAAATGTGCTACTCGAGAAATTCCCTCCTTCTAGGATTGATTATCG
CAACCACCTGAAGCAGAAGAAGAAGGACCTGACTCTACAAGAACTTATCAGTCACGTTCGCACAAAGGAAGCCAACGAGCAAAAGGATAAGCTCTCTTCTCAATCCATAA
ATTGA
Protein sequenceShow/hide protein sequence
MPILLSRQWSCPHDNEIIAHGSIFVLLFQQFESKILIMVAIEFGKLEIDYIHIGAQPTTVVVTTVAATTTTKPVNIVAAQYTATALAVTVDSRTSSAIMSNDKPIMDWVR
EYENLVASVLFDGIKMCEIFQANVLLEKFPPSRIDYRNHLKQKKKDLTLQELISHVRTKEANEQKDKLSSQSIN