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Moc11g15570 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g15570
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr11:11752848..11753453
RNA-Seq ExpressionMoc11g15570
SyntenyMoc11g15570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042223.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.4e-3854.87Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        L LQELISH+R E+ANR KDKL SQ+LNS   NL ESS V++D    K KQ    + + +K  Q K T G+I+K KLV YVCGK  HKSYQC QRK R  
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
        Q+ TPQANLA  D  IIA  VEANL                            D+ADGECVFMGNSATA V+GK +V+L+LT  KTLSLSNVLYV
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

KAA0049793.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.4e-3854.36Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        L LQELISH+R E+ANR KDKL+SQ+LNS   NL ESS V++D    + KQ    + + ++  Q K T G+I+K KLV YVCGK  HKSYQC QRK R +
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
        Q+ TPQANLA  D  IIA  VEANL                            D+ADGECVFMGNSATAEV+GK +V+L+LT  KTLSLSNVLYV
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

TYK23469.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.2e-3753.33Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        L LQELISH+R E+ANR KDKL+SQ+LNS   NL ESS V++D    + KQ    + + ++  Q K T G+I+K KLV YVCGK  HKSYQC QRK+R  
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
        Q+ TPQANLA  D  IIA  VEANL                            D+ADGECVFM NSATA V+GK +V+L+LT  KTLSLSNVLYV
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]8.0e-4065.56Show/hide
Query:  FKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKDQRATPQANLAVTDDIIIAMGVEANL-------------------
        FKNKGK I RDRAQ NKG QPKNT GRIEKSKLV YVC KP HKSYQCTQ+KDR DQRATPQANL  TDDII  + VE NL                   
Subjt:  FKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKDQRATPQANLAVTDDIIIAMGVEANL-------------------

Query:  ---------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
                 DSADGECVFMGNSAT  VLGK +VLL+LT  KTLSLSNVLYV
Subjt:  ---------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

XP_022156023.1 uncharacterized protein LOC111022991 [Momordica charantia]4.6e-4361.49Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        LTLQELISHV  E+ANR KDKLSSQSLNS K NL ESSS SKD+FK KGK IARDRAQ NKG +PKN  GR+EK KLV YVC KP HKSYQCTQ+KDRKD
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGK
        QR  PQAN+  T +II  + VEANL                            DSA+GECVFMGN    E LGK
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGK

TrEMBL top hitse value%identityAlignment
A0A5A7TG73 Ty1-copia retrotransposon protein1.6e-3854.87Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        L LQELISH+R E+ANR KDKL SQ+LNS   NL ESS V++D    K KQ    + + +K  Q K T G+I+K KLV YVCGK  HKSYQC QRK R  
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
        Q+ TPQANLA  D  IIA  VEANL                            D+ADGECVFMGNSATA V+GK +V+L+LT  KTLSLSNVLYV
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

A0A5A7U1P8 Ty1-copia retrotransposon protein2.1e-3854.36Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        L LQELISH+R E+ANR KDKL+SQ+LNS   NL ESS V++D    + KQ    + + ++  Q K T G+I+K KLV YVCGK  HKSYQC QRK R +
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
        Q+ TPQANLA  D  IIA  VEANL                            D+ADGECVFMGNSATAEV+GK +V+L+LT  KTLSLSNVLYV
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

A0A5D3DJQ1 Ty1-copia retrotransposon protein1.1e-3753.33Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        L LQELISH+R E+ANR KDKL+SQ+LNS   NL ESS V++D    + KQ    + + ++  Q K T G+I+K KLV YVCGK  HKSYQC QRK+R  
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
        Q+ TPQANLA  D  IIA  VEANL                            D+ADGECVFM NSATA V+GK +V+L+LT  KTLSLSNVLYV
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

A0A6J1DHJ4 uncharacterized protein LOC1110211473.9e-4065.56Show/hide
Query:  FKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKDQRATPQANLAVTDDIIIAMGVEANL-------------------
        FKNKGK I RDRAQ NKG QPKNT GRIEKSKLV YVC KP HKSYQCTQ+KDR DQRATPQANL  TDDII  + VE NL                   
Subjt:  FKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKDQRATPQANLAVTDDIIIAMGVEANL-------------------

Query:  ---------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV
                 DSADGECVFMGNSAT  VLGK +VLL+LT  KTLSLSNVLYV
Subjt:  ---------DSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYV

A0A6J1DPG7 uncharacterized protein LOC1110229912.2e-4361.49Show/hide
Query:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD
        LTLQELISHV  E+ANR KDKLSSQSLNS K NL ESSS SKD+FK KGK IARDRAQ NKG +PKN  GR+EK KLV YVC KP HKSYQCTQ+KDRKD
Subjt:  LTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKD

Query:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGK
        QR  PQAN+  T +II  + VEANL                            DSA+GECVFMGN    E LGK
Subjt:  QRATPQANLAVTDDIIIAMGVEANL----------------------------DSADGECVFMGNSATAEVLGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTGACTCTACAAGAACTGATCAGTCACGTGCGCATCGAGAAAGCCAATAGGCAAAAGGATAAACTCTCTTCTCAATCCCTAAATTCAACGAAATTTAACTTATT
TGAATCTTCTAGTGTTTCCAAAGACAAGTTCAAAAACAAAGGGAAGCAAATTGCAAGGGATAGAGCTCAAATGAACAAAGGTTTCCAACCTAAAAATACTTGTGGAAGAA
TCGAAAAATCCAAACTGGTATACTATGTATGTGGAAAACCTTGGCACAAATCCTATCAGTGCACCCAAAGAAAAGATAGGAAAGATCAAAGGGCTACTCCACAAGCTAAC
CTTGCAGTGACGGACGACATCATTATCGCTATGGGTGTGGAAGCAAATCTGGACTCCGCTGATGGCGAATGTGTTTTTATGGGAAACTCTGCCACAGCTGAAGTACTTGG
GAAAGAGGAGGTTCTCTTGGAACTCACATTTGACAAAACTTTATCATTAAGTAATGTATTGTATGTAGGAATTTGGTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTGACTCTACAAGAACTGATCAGTCACGTGCGCATCGAGAAAGCCAATAGGCAAAAGGATAAACTCTCTTCTCAATCCCTAAATTCAACGAAATTTAACTTATT
TGAATCTTCTAGTGTTTCCAAAGACAAGTTCAAAAACAAAGGGAAGCAAATTGCAAGGGATAGAGCTCAAATGAACAAAGGTTTCCAACCTAAAAATACTTGTGGAAGAA
TCGAAAAATCCAAACTGGTATACTATGTATGTGGAAAACCTTGGCACAAATCCTATCAGTGCACCCAAAGAAAAGATAGGAAAGATCAAAGGGCTACTCCACAAGCTAAC
CTTGCAGTGACGGACGACATCATTATCGCTATGGGTGTGGAAGCAAATCTGGACTCCGCTGATGGCGAATGTGTTTTTATGGGAAACTCTGCCACAGCTGAAGTACTTGG
GAAAGAGGAGGTTCTCTTGGAACTCACATTTGACAAAACTTTATCATTAAGTAATGTATTGTATGTAGGAATTTGGTGTTAG
Protein sequenceShow/hide protein sequence
MALTLQELISHVRIEKANRQKDKLSSQSLNSTKFNLFESSSVSKDKFKNKGKQIARDRAQMNKGFQPKNTCGRIEKSKLVYYVCGKPWHKSYQCTQRKDRKDQRATPQAN
LAVTDDIIIAMGVEANLDSADGECVFMGNSATAEVLGKEEVLLELTFDKTLSLSNVLYVGIWC