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Moc11g16100 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g16100
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:12325012..12327735
RNA-Seq ExpressionMoc11g16100
SyntenyMoc11g16100
Gene Ontology termsGO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KHN35463.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]1.7e-0749.38Show/hide
Query:  LMKALTDRYEKSSGNSKVYL-------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAE
        LMKAL+D YEK S  +KVYL             I ++ EVKA+ LLSSLPDSW    TAVS++  + +LK SDICD  ++E
Subjt:  LMKALTDRYEKSSGNSKVYL-------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAE

RVW24492.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.2e-1050Show/hide
Query:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEV
        +MKAL+D YEKSS N+K   I +  E++A+ +L+SLP+SWE M+ A+SN++G + LK++DI D  +AEE+
Subjt:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEV

RVW62803.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.6e-0832.74Show/hide
Query:  LMKALTDRYEKSSGNSKVYL---------------------------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIA
        LMKAL+D YEK S N+KV+L                                 I +  E++A+ +L+SLP+SWE M+ AVSN+ G + LK++DI D  +A
Subjt:  LMKALTDRYEKSSGNSKVYL---------------------------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIA

Query:  EEVTEKRVRRILHPLLEGRTV--WN--------QHWKLKDDQQKGDSVN-VTERAKEFLTYVDSNSVD
        EE+  KR R        G+ V  WN        +  K    + + DS N VTE  ++ L     N +D
Subjt:  EEVTEKRVRRILHPLLEGRTV--WN--------QHWKLKDDQQKGDSVN-VTERAKEFLTYVDSNSVD

RVW99366.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.8e-0935.11Show/hide
Query:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEKRVRR------ILHPLLEGRTVWNQHWK
        LMKAL+D YEKSS N+K   I +  E++A+ +L+S+ +SWET++  VSN+ G + LK++DI D  +AEE+  +   +       L+    GR  + +  K
Subjt:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEKRVRR------ILHPLLEGRTVWNQHWK

Query:  LKDDQQKGDSVN-VTERAKEFLTYVDSNSVD
            + + D  N VTE   + L  V  + +D
Subjt:  LKDDQQKGDSVN-VTERAKEFLTYVDSNSVD

XP_022152845.1 uncharacterized protein LOC111020469 [Momordica charantia]2.2e-0739.81Show/hide
Query:  MRLMKALTDRYEKSSGNSKVYLIT---------------------------------WKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAA
        M LM AL + YEK+S N+KVYL T                                 +  EV AI LL SLPDSWE M+ A+SN+   + LKF D+ DAA
Subjt:  MRLMKALTDRYEKSSGNSKVYLIT---------------------------------WKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAA

Query:  IAEEVTEK
        +AEE+  K
Subjt:  IAEEVTEK

TrEMBL top hitse value%identityAlignment
A0A0D3AEM1 CCHC-type domain-containing protein6.2e-0839.81Show/hide
Query:  LMKALTDRYEKSSGNSKVYL---------------------------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIA
        LMK L+D YEK S NSKV+L                                 I ++ EV+A+ LL+SLP+SWE+M+ AVSN++G + LKF+D+ D  +A
Subjt:  LMKALTDRYEKSSGNSKVYL---------------------------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIA

Query:  EEV
        EEV
Subjt:  EEV

A0A438CMP8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-1050Show/hide
Query:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEV
        +MKAL+D YEKSS N+K   I +  E++A+ +L+SLP+SWE M+ A+SN++G + LK++DI D  +AEE+
Subjt:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEV

A0A438FS76 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0832.74Show/hide
Query:  LMKALTDRYEKSSGNSKVYL---------------------------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIA
        LMKAL+D YEK S N+KV+L                                 I +  E++A+ +L+SLP+SWE M+ AVSN+ G + LK++DI D  +A
Subjt:  LMKALTDRYEKSSGNSKVYL---------------------------------ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIA

Query:  EEVTEKRVRRILHPLLEGRTV--WN--------QHWKLKDDQQKGDSVN-VTERAKEFLTYVDSNSVD
        EE+  KR R        G+ V  WN        +  K    + + DS N VTE  ++ L     N +D
Subjt:  EEVTEKRVRRILHPLLEGRTV--WN--------QHWKLKDDQQKGDSVN-VTERAKEFLTYVDSNSVD

A0A438IRM0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-0935.11Show/hide
Query:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEKRVRR------ILHPLLEGRTVWNQHWK
        LMKAL+D YEKSS N+K   I +  E++A+ +L+S+ +SWET++  VSN+ G + LK++DI D  +AEE+  +   +       L+    GR  + +  K
Subjt:  LMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEKRVRR------ILHPLLEGRTVWNQHWK

Query:  LKDDQQKGDSVN-VTERAKEFLTYVDSNSVD
            + + D  N VTE   + L  V  + +D
Subjt:  LKDDQQKGDSVN-VTERAKEFLTYVDSNSVD

A0A7N2LFB2 Integrase catalytic domain-containing protein6.2e-0844.16Show/hide
Query:  LMKALTDRYEKSSGNSKVYL----ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEK
        LMK L+  YEK S N+K+ L    I +  E++A+ +L+SLP+SWE M+  VSN++G + LK++DI D  +AEE+  +
Subjt:  LMKALTDRYEKSSGNSKVYL----ITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGATGAAGGCTTTGACTGACAGGTATGAAAAATCTTCTGGCAACAGCAAGGTGTATCTCATCACATGGAAGAGGGAGGTGAAGGCTATAAAACTGTTGTCTTC
TTTGCCTGATAGTTGGGAGACGATGAAGACGGCGGTGTCAAATACGTTAGGGGACAAGAGTTTGAAATTTTCAGATATTTGTGATGCTGCAATTGCTGAGGAGGTCACAG
AAAAGAGAGTGAGAAGAATTTTGCATCCACTTCTGGAGGGGAGAACAGTTTGGAATCAGCATTGGAAGCTAAAAGATGATCAACAGAAAGGAGATTCTGTGAATGTCACA
GAAAGAGCGAAAGAGTTTCTAACCTATGTTGACAGCAACTCAGTAGATCGACCATCAGGGTATGGACACTGCAACATCGGTACATGTATCTTCAGACAAAAAGTGAATCT
GGAGAAGCTGCTGAGGAGCAGCATAATTAGGGGAGAAATATCGGAGCATGGCAAGGTTAGAGCATGTCGTGCTGGAGCATCGCATGCTGCAGAACTTCGTGGGCAACCCA
ATAACAAAGCTATGTTGATTTATGTTATCTTACTGAACATTGTTGGCTACTGTGTCGAGTATGCTAGCTTCTGTATGATCCGGAAGGGTGTATGGGGATTTGAGAGACAG
AGGATGCATAAGGCCGCAGATGGTTTATGGCGAGACTTGAAGGAATTGGCAGCATTGATAACCAAGACAGCATTAGAAATTTTGACATCATTTCAAGTACAACAGCTGGG
AAGTAATGGAAATGGAAAGAGGAATAGCTCAATGAGTTGTTCAATAGGTTGCCAGTTTCCAGCTCTAGTTGTCAAATGGTTTGGCAAGCTGATGAAGTCGCATAGGCGAA
AGGGTGCATCGAGGGAGAGGACTATAGTGGGTGCTGAAGTCAAGAGTTGTGTCTCTGAAGTGGCAACAGACTTGAGTGGGAGTGCCAAGTCATTAGAGGGAAAATCTTCC
TTCAGAGGTCGTTGGTTCGATCGAGGAAGGAAGCATCAGGGACCATTAGATCGAGTTGGAGTAGGCTGTGTATCAAGCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACTGATGAAGGCTTTGACTGACAGGTATGAAAAATCTTCTGGCAACAGCAAGGTGTATCTCATCACATGGAAGAGGGAGGTGAAGGCTATAAAACTGTTGTCTTC
TTTGCCTGATAGTTGGGAGACGATGAAGACGGCGGTGTCAAATACGTTAGGGGACAAGAGTTTGAAATTTTCAGATATTTGTGATGCTGCAATTGCTGAGGAGGTCACAG
AAAAGAGAGTGAGAAGAATTTTGCATCCACTTCTGGAGGGGAGAACAGTTTGGAATCAGCATTGGAAGCTAAAAGATGATCAACAGAAAGGAGATTCTGTGAATGTCACA
GAAAGAGCGAAAGAGTTTCTAACCTATGTTGACAGCAACTCAGTAGATCGACCATCAGGGTATGGACACTGCAACATCGGTACATGTATCTTCAGACAAAAAGTGAATCT
GGAGAAGCTGCTGAGGAGCAGCATAATTAGGGGAGAAATATCGGAGCATGGCAAGGTTAGAGCATGTCGTGCTGGAGCATCGCATGCTGCAGAACTTCGTGGGCAACCCA
ATAACAAAGCTATGTTGATTTATGTTATCTTACTGAACATTGTTGGCTACTGTGTCGAGTATGCTAGCTTCTGTATGATCCGGAAGGGTGTATGGGGATTTGAGAGACAG
AGGATGCATAAGGCCGCAGATGGTTTATGGCGAGACTTGAAGGAATTGGCAGCATTGATAACCAAGACAGCATTAGAAATTTTGACATCATTTCAAGTACAACAGCTGGG
AAGTAATGGAAATGGAAAGAGGAATAGCTCAATGAGTTGTTCAATAGGTTGCCAGTTTCCAGCTCTAGTTGTCAAATGGTTTGGCAAGCTGATGAAGTCGCATAGGCGAA
AGGGTGCATCGAGGGAGAGGACTATAGTGGGTGCTGAAGTCAAGAGTTGTGTCTCTGAAGTGGCAACAGACTTGAGTGGGAGTGCCAAGTCATTAGAGGGAAAATCTTCC
TTCAGAGGTCGTTGGTTCGATCGAGGAAGGAAGCATCAGGGACCATTAGATCGAGTTGGAGTAGGCTGTGTATCAAGCGCCTAG
Protein sequenceShow/hide protein sequence
MRLMKALTDRYEKSSGNSKVYLITWKREVKAIKLLSSLPDSWETMKTAVSNTLGDKSLKFSDICDAAIAEEVTEKRVRRILHPLLEGRTVWNQHWKLKDDQQKGDSVNVT
ERAKEFLTYVDSNSVDRPSGYGHCNIGTCIFRQKVNLEKLLRSSIIRGEISEHGKVRACRAGASHAAELRGQPNNKAMLIYVILLNIVGYCVEYASFCMIRKGVWGFERQ
RMHKAADGLWRDLKELAALITKTALEILTSFQVQQLGSNGNGKRNSSMSCSIGCQFPALVVKWFGKLMKSHRRKGASRERTIVGAEVKSCVSEVATDLSGSAKSLEGKSS
FRGRWFDRGRKHQGPLDRVGVGCVSSA