; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g16980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g16980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr11:13011521..13013878
RNA-Seq ExpressionMoc11g16980
SyntenyMoc11g16980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040554.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.6e-7158.16Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+Y+LTT +      T T+T      + +  GAV+ VT        I   +K+  DNKT+R HLL 
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI

Query:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ
        HM++  FDLF+ QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK 
Subjt:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ

Query:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
        KKKDL LQ+LISH+RTEEANR KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.8e-7157.95Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+YVLTT   T+D   T + +   ++  G  T   V           +   +K+  DNKT+RGHLL
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL

Query:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK
         HM++  FDLFV QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK
Subjt:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK

Query:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
         KKKDL LQ+LISH+RTEEANR KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.8e-7157.95Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+YVLTT   T+D   T + +   ++  G  T   V           +   +K+  DNKT+RGHLL
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL

Query:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK
         HM++  FDLFV QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK
Subjt:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK

Query:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
         KKKDL LQ+LISH+RTEEANR KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

TYK05597.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.6e-7157.8Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+Y+LTT +      T T+T      + +  GAV+ VT        I   +K+  DNKT+R HLL 
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI

Query:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ
        HM++  FDLF+ QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK 
Subjt:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ

Query:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
        KKKDL LQ+LISH+RTEEAN+ KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

XP_022150382.1 uncharacterized protein LOC111018559 [Momordica charantia]2.9e-9268.17Show/hide
Query:  MASIRSDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTTITADVAATATATV--PTKAVAGVPTG---AVVGVTAGAAASTAIAAADKFETDN
        MAS+RS K+LPD SKLESLDGSN   WSQKL IFFEQLEV+YVLTT  ADVAA A A       AVAG   G   AV G   GA  +TA+AAADKF+ DN
Subjt:  MASIRSDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTTITADVAATATATV--PTKAVAGVPTG---AVVGVTAGAAASTAIAAADKFETDN

Query:  KTIRGHLLIHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSW
        KTI  HLL HMN   FD FVT+K AKI+WDTLESRYGGD              FQMADDK ++D+VHEY+NLVANVLSEGM+MCEILQ N+LLEKF P W
Subjt:  KTIRGHLLIHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSW

Query:  SDYRNHLKQKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSK
        SDYRNHLK KKKDLTLQ++ISH+R E+AN+Q DKLSSQ  NSV ANLIE SG NKDRF+G+GKQVA+ERVQK KGFQFKS    IEK K
Subjt:  SDYRNHLKQKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSK

TrEMBL top hitse value%identityAlignment
A0A5A7TAR9 Ty1-copia retrotransposon protein7.9e-7258.16Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+Y+LTT +      T T+T      + +  GAV+ VT        I   +K+  DNKT+R HLL 
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI

Query:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ
        HM++  FDLF+ QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK 
Subjt:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ

Query:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
        KKKDL LQ+LISH+RTEEANR KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

A0A5A7U9X9 Ty1-copia retrotransposon protein1.4e-7157.95Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+YVLTT   T+D   T + +   ++  G  T   V           +   +K+  DNKT+RGHLL
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL

Query:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK
         HM++  FDLFV QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK
Subjt:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK

Query:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
         KKKDL LQ+LISH+RTEEANR KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

A0A5D3BZI1 Ty1-copia retrotransposon protein1.4e-7157.95Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+YVLTT   T+D   T + +   ++  G  T   V           +   +K+  DNKT+RGHLL
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT--ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLL

Query:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK
         HM++  FDLFV QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK
Subjt:  IHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLK

Query:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
         KKKDL LQ+LISH+RTEEANR KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  QKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

A0A5D3C1A6 Ty1-copia retrotransposon protein1.8e-7157.8Show/hide
Query:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI
        S+K+LPDLSKLE LDG+N R WSQKLLIFFEQLEV+Y+LTT +      T T+T      + +  GAV+ VT        I   +K+  DNKT+R HLL 
Subjt:  SDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTT-ITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLI

Query:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ
        HM++  FDLF+ QK AK IW TLESRYGGD              FQM DDKPV++++HEYENLVANVLSEGM+MCEILQANVLLEKF PSW+DYRNHLK 
Subjt:  HMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQ

Query:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV
        KKKDL LQ+LISH+RTEEAN+ KDKL+SQ  NSVNANL+E S  N+DR     KQ    + +  +  QFK++   I+K K+V
Subjt:  KKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV

A0A6J1DAK7 uncharacterized protein LOC1110185591.4e-9268.17Show/hide
Query:  MASIRSDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTTITADVAATATATV--PTKAVAGVPTG---AVVGVTAGAAASTAIAAADKFETDN
        MAS+RS K+LPD SKLESLDGSN   WSQKL IFFEQLEV+YVLTT  ADVAA A A       AVAG   G   AV G   GA  +TA+AAADKF+ DN
Subjt:  MASIRSDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTTITADVAATATATV--PTKAVAGVPTG---AVVGVTAGAAASTAIAAADKFETDN

Query:  KTIRGHLLIHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSW
        KTI  HLL HMN   FD FVT+K AKI+WDTLESRYGGD              FQMADDK ++D+VHEY+NLVANVLSEGM+MCEILQ N+LLEKF P W
Subjt:  KTIRGHLLIHMNELPFDLFVTQKFAKIIWDTLESRYGGD--------------FQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSW

Query:  SDYRNHLKQKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSK
        SDYRNHLK KKKDLTLQ++ISH+R E+AN+Q DKLSSQ  NSV ANLIE SG NKDRF+G+GKQVA+ERVQK KGFQFKS    IEK K
Subjt:  SDYRNHLKQKKKDLTLQQLISHIRTEEANRQKDKLSSQFFNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATAAGATCCGACAAATTGCTTCCAGATCTATCCAAACTTGAATCATTGGATGGATCAAATTCCCGATGCTGGTCTCAGAAGCTACTCATCTTCTTCGAACA
ATTAGAGGTAAACTACGTCCTGACCACCATCACTGCCGATGTAGCTGCCACCGCCACCGCCACCGTTCCTACCAAAGCCGTTGCCGGAGTTCCAACTGGAGCAGTCGTCG
GAGTTACCGCCGGAGCGGCCGCCAGCACCGCTATCGCTGCCGCCGATAAGTTCGAGACGGATAACAAGACTATTCGCGGGCATCTCCTCATCCATATGAATGAATTACCA
TTTGATCTTTTTGTTACCCAAAAATTTGCAAAGATCATTTGGGACACTTTGGAGTCAAGATATGGTGGAGATTTTCAAATGGCAGATGACAAACCAGTCATTGATCGAGT
TCACGAATACGAGAACTTGGTGGCTAATGTTCTATCCGAGGGCATGAGGATGTGCGAAATCCTCCAGGCAAATGTGCTACTCGAGAAATTTCTCCCTTCTTGGAGTGATT
ATCGCAATCATCTGAAACAGAAGAAGAAAGATCTGACATTGCAACAATTGATCAGTCATATACGCACAGAAGAAGCCAATAGGCAAAAAGATAAGCTCTCTTCTCAGTTT
TTCAATTCAGTTAATGCTAACTTAATTGAATTATCTGGTGGAAATAAAGACAGGTTTGAAGGTCAAGGAAAACAAGTCGCTCGGGAAAGAGTGCAAAAGAAGAAGGGATT
TCAATTCAAGAGTTCCAGTAGAATAATTGAAAAATCAAAGATAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATAAGATCCGACAAATTGCTTCCAGATCTATCCAAACTTGAATCATTGGATGGATCAAATTCCCGATGCTGGTCTCAGAAGCTACTCATCTTCTTCGAACA
ATTAGAGGTAAACTACGTCCTGACCACCATCACTGCCGATGTAGCTGCCACCGCCACCGCCACCGTTCCTACCAAAGCCGTTGCCGGAGTTCCAACTGGAGCAGTCGTCG
GAGTTACCGCCGGAGCGGCCGCCAGCACCGCTATCGCTGCCGCCGATAAGTTCGAGACGGATAACAAGACTATTCGCGGGCATCTCCTCATCCATATGAATGAATTACCA
TTTGATCTTTTTGTTACCCAAAAATTTGCAAAGATCATTTGGGACACTTTGGAGTCAAGATATGGTGGAGATTTTCAAATGGCAGATGACAAACCAGTCATTGATCGAGT
TCACGAATACGAGAACTTGGTGGCTAATGTTCTATCCGAGGGCATGAGGATGTGCGAAATCCTCCAGGCAAATGTGCTACTCGAGAAATTTCTCCCTTCTTGGAGTGATT
ATCGCAATCATCTGAAACAGAAGAAGAAAGATCTGACATTGCAACAATTGATCAGTCATATACGCACAGAAGAAGCCAATAGGCAAAAAGATAAGCTCTCTTCTCAGTTT
TTCAATTCAGTTAATGCTAACTTAATTGAATTATCTGGTGGAAATAAAGACAGGTTTGAAGGTCAAGGAAAACAAGTCGCTCGGGAAAGAGTGCAAAAGAAGAAGGGATT
TCAATTCAAGAGTTCCAGTAGAATAATTGAAAAATCAAAGATAGTATGA
Protein sequenceShow/hide protein sequence
MASIRSDKLLPDLSKLESLDGSNSRCWSQKLLIFFEQLEVNYVLTTITADVAATATATVPTKAVAGVPTGAVVGVTAGAAASTAIAAADKFETDNKTIRGHLLIHMNELP
FDLFVTQKFAKIIWDTLESRYGGDFQMADDKPVIDRVHEYENLVANVLSEGMRMCEILQANVLLEKFLPSWSDYRNHLKQKKKDLTLQQLISHIRTEEANRQKDKLSSQF
FNSVNANLIELSGGNKDRFEGQGKQVARERVQKKKGFQFKSSSRIIEKSKIV