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Moc11g17860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g17860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:13664995..13665905
RNA-Seq ExpressionMoc11g17860
SyntenyMoc11g17860
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]2.1e-3456.43Show/hide
Query:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR
        +  +F+       ASH     LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ARVLSFAGRLQL+RSVL+S QVYWA+VFVLPA 
Subjt:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR

Query:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW
        V +EV++ILRS+LW+G E G  G KVA  +VCLP   GG+
Subjt:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]2.1e-3456.43Show/hide
Query:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR
        +  +F+       ASH     LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ARVLSFAGRLQL+RSVL+S QVYWA+VFVLPA 
Subjt:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR

Query:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW
        V +EV++ILRS+LW+G E G  G KVA  +VCLP   GG+
Subjt:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]2.1e-3447.28Show/hide
Query:  MILVEKLLEFIAVQNWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPL
        +   + L+ F A  N+ +     T    G      +   +   + +  +FL    +  AS      LA+ +GFS+  LPVRYLG+PLL  RL   DC PL
Subjt:  MILVEKLLEFIAVQNWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPL

Query:  LEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG
        +++I++RIRSWSARVLSFAGRLQL+RSVL+S QVYWA+VF+LP +V  +V++ILRS+LW+G E G  GAKVA  EVCLP   GG
Subjt:  LEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]1.3e-3648.39Show/hide
Query:  GLMILVEKLLEFIAVQNWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCK
        GL+I ++ L+ F    N  +     T    G      +   +   + +  +FL    +  AS      LA+ +GFS+  LPVRYLG+PLLSRRL   DC 
Subjt:  GLMILVEKLLEFIAVQNWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCK

Query:  PLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG
        PL+++I++RIRSWSARVLSFAGRLQL+RSVL+S QVYWA+VF+LP +V  +V++ILR++LW+G E G  GAKVA  EVCLP   GG
Subjt:  PLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG

XP_031740424.1 uncharacterized protein LOC116403425 [Cucumis sativus]1.9e-3566.67Show/hide
Query:  LGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAK
        +GFS+  LPVRYLG+PLLSRRL   DC PL+++I++RIRSWSARVLSFAGRLQL+RSVL+S QVYWA+VF+LP +V  +V++ILR++LW+G E G  GAK
Subjt:  LGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAK

Query:  VALSEVCLPLTGGG
        VA  EVCLP   GG
Subjt:  VALSEVCLPLTGGG

TrEMBL top hitse value%identityAlignment
A0A1S4E258 uncharacterized protein LOC1034968803.2e-3349.7Show/hide
Query:  NWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSAR
        NW  +  F    ++GT       +F + K  +  +F+      G SH A   LA+ +GF +  LPVRYLG+PLL+ RL   DC PL+++I++ IRSW+AR
Subjt:  NWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSAR

Query:  VLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGG
        VLSF G LQL+RSVL S QVYWA++FVLPA V +EV++ILRS+LW+G E G  G KVA  EVCLP   G
Subjt:  VLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGG

A0A5A7SPE5 Reverse transcriptase domain-containing protein1.0e-3456.43Show/hide
Query:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR
        +  +F+       ASH     LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ARVLSFAGRLQL+RSVL+S QVYWA+VFVLPA 
Subjt:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR

Query:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW
        V +EV++ILRS+LW+G E G  G KVA  +VCLP   GG+
Subjt:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW

A0A5A7VHU9 F17F8.55.5e-3355.4Show/hide
Query:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR
        +  +F+       ASH     LA+ +GF    LPVRYLG+PLL  RL   DC PL++++++RIRSW+A+VLSF GRLQL+RSVL+S QVYW +VFVLPA 
Subjt:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR

Query:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG
        V +EV++ILRS+LW+G E G  G KVA  EVCLP   GG
Subjt:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG

A0A5D3DXE4 Reverse transcriptase domain-containing protein1.0e-3456.43Show/hide
Query:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR
        +  +F+       ASH     LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ARVLSFAGRLQL+RSVL+S QVYWA+VFVLPA 
Subjt:  RKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPAR

Query:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW
        V +EV++ILRS+LW+G E G  G KVA  +VCLP   GG+
Subjt:  VVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGW

A0A6J1DTG0 uncharacterized protein LOC1110241651.7e-3471.82Show/hide
Query:  LASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGP
        LA+FLGFSV +L VRYLGV LLSRR+S  DCKPLLE+I  R+R+WSAR+LSFA  L LIR V QSFQVYWA+VF+LPARV+H+VE+IL SFLWKG E G 
Subjt:  LASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGP

Query:  SGAKVALSEV
        SG KVA SE+
Subjt:  SGAKVALSEV

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.2e-1033Show/hide
Query:  VPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG
        +P+L +R++      +LE++S+R+  W  + LSFAGRL L ++VL S  V+  +  +LP  +++ ++++ R+FLW           V  S+VC P   GG
Subjt:  VPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGG

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.9e-2550.89Show/hide
Query:  FSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVA
        F+   LPVRYLG+PLL+++++  D  PL+EKI  RI  W+AR LSFAGRLQLI SV+ S   +W + F LP+  + E++ I  SFLW G E     AKVA
Subjt:  FSVATLPVRYLGVPLLSRRLSFRDCKPLLEKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVA

Query:  LSEVCLPLTGGG
         S+VC P   GG
Subjt:  LSEVCLPLTGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAGAGAAGGAAGCAAGGCTTGATGATTTTGGTGGAGAAGTTGCTAGAATTTATAGCTGTGCAGAATTGGTTAGTGGAACACTTCTTCTACACGTATTCATCGGT
TGGAACCACCAAAACGCAATGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCTTCCCAGGCGCCTGGCGCCTCCCATGTAGCTTTTT
TCGGGTTGGCTTCTTTCTTGGGGTTTTCGGTGGCAACTCTCCCGGTGCGGTATCTTGGCGTTCCGCTCCTTTCTCGTCGGTTGTCTTTTCGTGATTGTAAGCCTTTGTTG
GAGAAGATTAGTGCTCGTATTCGGAGTTGGTCGGCTCGTGTGCTTTCTTTTGCTGGTCGGTTGCAGCTTATTCGCTCGGTGCTTCAAAGTTTCCAGGTTTACTGGGCCAC
TGTTTTTGTTCTTCCGGCCCGGGTGGTGCATGAGGTGGAGCGTATTCTTCGCTCGTTTCTGTGGAAGGGTTGTGAGGGTGGGCCCTCTGGGGCAAAGGTGGCTTTGTCTG
AGGTCTGTCTTCCTCTTACGGGGGGGGGCTGGGTGTCCGCCACTTGGCCTCGTGGAATTGTGCTGCTATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAAGAGAAGGAAGCAAGGCTTGATGATTTTGGTGGAGAAGTTGCTAGAATTTATAGCTGTGCAGAATTGGTTAGTGGAACACTTCTTCTACACGTATTCATCGGT
TGGAACCACCAAAACGCAATGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCTTCCCAGGCGCCTGGCGCCTCCCATGTAGCTTTTT
TCGGGTTGGCTTCTTTCTTGGGGTTTTCGGTGGCAACTCTCCCGGTGCGGTATCTTGGCGTTCCGCTCCTTTCTCGTCGGTTGTCTTTTCGTGATTGTAAGCCTTTGTTG
GAGAAGATTAGTGCTCGTATTCGGAGTTGGTCGGCTCGTGTGCTTTCTTTTGCTGGTCGGTTGCAGCTTATTCGCTCGGTGCTTCAAAGTTTCCAGGTTTACTGGGCCAC
TGTTTTTGTTCTTCCGGCCCGGGTGGTGCATGAGGTGGAGCGTATTCTTCGCTCGTTTCTGTGGAAGGGTTGTGAGGGTGGGCCCTCTGGGGCAAAGGTGGCTTTGTCTG
AGGTCTGTCTTCCTCTTACGGGGGGGGGCTGGGTGTCCGCCACTTGGCCTCGTGGAATTGTGCTGCTATTGTGA
Protein sequenceShow/hide protein sequence
MIKRRKQGLMILVEKLLEFIAVQNWLVEHFFYTYSSVGTTKTQWKTRFIKGKVGRKPVFLQASQAPGASHVAFFGLASFLGFSVATLPVRYLGVPLLSRRLSFRDCKPLL
EKISARIRSWSARVLSFAGRLQLIRSVLQSFQVYWATVFVLPARVVHEVERILRSFLWKGCEGGPSGAKVALSEVCLPLTGGGWVSATWPRGIVLLL