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Moc11g17890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g17890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:13682027..13684175
RNA-Seq ExpressionMoc11g17890
SyntenyMoc11g17890
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1212661.1 hypothetical protein CJ030_MR5G009703 [Morella rubra]9.8e-1048.44Show/hide
Query:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        R D+  W   P+GLFS+ + + V+R  R  VPW  L+W  G + KHSFI WLA+R+RL T+D+L
Subjt:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

KAF8406614.1 hypothetical protein HHK36_008704 [Tetracentron sinense]5.8e-1052.63Show/hide
Query:  IWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRD
        IW+P+PSG FS+ S W  LRS +  +PW  ++WF  NI +HSFI WLA+ D L TR+
Subjt:  IWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRD

XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]4.4e-1875Show/hide
Query:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        R DV +WIP  SGLFSVSS W VLR T+  VPWFS +WF GNI KHSFIAWLAVRDRLAT DRL
Subjt:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]4.9e-1779.31Show/hide
Query:  IPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLC
        I T SGLFSVS+   VLR  R PVPWFSL+WFGGNI KHSFIAWLA+RDRLATRDRLC
Subjt:  IPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLC

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]2.9e-1762.86Show/hide
Query:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        ++  +G+ D  +W P  SGLFSVSSVWG+LR  R PV +F L+WFGGNI KHSFI+WLA+RDRL TR+RL
Subjt:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

TrEMBL top hitse value%identityAlignment
A0A2N9J7R7 Uncharacterized protein2.5e-1145.45Show/hide
Query:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLCLLLTGFHIGLLSLLRLV
        +Q  I   D  +W  T +G F+ ++ W  LRS +  VPW+ LIWF G I KH FI WLA++DRL T+DR  LLL G ++ L  LL+++
Subjt:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLCLLLTGFHIGLLSLLRLV

A0A6A1VIM7 zf-RVT domain-containing protein4.8e-1048.44Show/hide
Query:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        R D+  W   P+GLFS+ + + V+R  R  VPW  L+W  G + KHSFI WLA+R+RL T+D+L
Subjt:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

A0A6J1D875 uncharacterized protein LOC1110178112.1e-1875Show/hide
Query:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        R DV +WIP  SGLFSVSS W VLR T+  VPWFS +WF GNI KHSFIAWLAVRDRLAT DRL
Subjt:  RVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

A0A6J1DTG0 uncharacterized protein LOC1110241652.4e-1779.31Show/hide
Query:  IPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLC
        I T SGLFSVS+   VLR  R PVPWFSL+WFGGNI KHSFIAWLA+RDRLATRDRLC
Subjt:  IPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLC

A0A6J1E271 uncharacterized protein LOC1110253241.4e-1762.86Show/hide
Query:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        ++  +G+ D  +W P  SGLFSVSSVWG+LR  R PV +F L+WFGGNI KHSFI+WLA+RDRL TR+RL
Subjt:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.9e-0738.57Show/hide
Query:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        M++ IG    PI           ++ W  L      V WF  IWF G I KH+FIAW+ +R RL T+DR+
Subjt:  MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.7e-0534Show/hide
Query:  FSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        F+    W   R  +  V W+  +WF     K+S +AW+A+++RL T DR+
Subjt:  FSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.4e-0844.62Show/hide
Query:  FSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLCLLLTGFHIGLLSLL
        FS ++ W  L      V W   IWF G I KH+FI+W+ +R RL TRD+  LL  G H+  L LL
Subjt:  FSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLCLLLTGFHIGLLSLL

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.0e-0540Show/hide
Query:  FSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        FS    W  +R     VPW  ++WF   I + S I W++  +RL TRDRL
Subjt:  FSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL

AT5G28615.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.2e-0944.44Show/hide
Query:  PSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL
        PS +FS +  W  L +    VPW   +WF GN LKH+FI+W+   +RL T D+L
Subjt:  PSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTTTTATTGGGAGGGTTGATGTGCCAATTTGGATTCCGACACCATCCGGTCTCTTCTCAGTGTCGAGTGTGTGGGGTGTGTTGCGGTCAACTCGACATCCTGT
CCCTTGGTTTTCTTTGATTTGGTTCGGCGGAAATATTTTGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTGATCGACTTGCTACGAGGGATCGCTTATGTCTTCTTC
TCACTGGGTTTCATATTGGTCTACTGAGCTTGCTTAGGCTTGTCACATTAGCACCAGGAAGTTTGCTCGTCGTCGTGTATGGTGCTTGGCTTGGACTTGAGCTGTTTCTT
TTATCTGGAGGGAGCGTAATGCTAGAGTTCATACATGTGGGATACAATTCCATAACAGTTGCCCCCACTCTCGAGATGATGCTCTTCCAGTCGTCTGATCTCATCATTTC
GAGAGTACATCTGCAGGTGTTGGAATATCCGGGATCGGCTTTCGCCAAAATTACCATTGTAGGTGTTGGAGAAGGCCAATGCCACCTTCTTATTGAGCCCATCCAATCCG
TCGCTACTAGATCACACGGATACATGGACTGGGACACCTTAACCACGGGGAGAGGAGAGAAAGTGGGCCTGGCCAGTGGGCCGAGCAGGGGTCGGAGCCGACCTGGTCGG
CTCGATCTTCCCTTTGTCGTTGCTTGGTTGGGCCTCTCTAGTCTGGAGAGGCCTATATCTTTGATTGATTTCTGTCTCATAACAGTTGCCCCCTTCTATCAAGATGGATG
A
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTTTTATTGGGAGGGTTGATGTGCCAATTTGGATTCCGACACCATCCGGTCTCTTCTCAGTGTCGAGTGTGTGGGGTGTGTTGCGGTCAACTCGACATCCTGT
CCCTTGGTTTTCTTTGATTTGGTTCGGCGGAAATATTTTGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTGATCGACTTGCTACGAGGGATCGCTTATGTCTTCTTC
TCACTGGGTTTCATATTGGTCTACTGAGCTTGCTTAGGCTTGTCACATTAGCACCAGGAAGTTTGCTCGTCGTCGTGTATGGTGCTTGGCTTGGACTTGAGCTGTTTCTT
TTATCTGGAGGGAGCGTAATGCTAGAGTTCATACATGTGGGATACAATTCCATAACAGTTGCCCCCACTCTCGAGATGATGCTCTTCCAGTCGTCTGATCTCATCATTTC
GAGAGTACATCTGCAGGTGTTGGAATATCCGGGATCGGCTTTCGCCAAAATTACCATTGTAGGTGTTGGAGAAGGCCAATGCCACCTTCTTATTGAGCCCATCCAATCCG
TCGCTACTAGATCACACGGATACATGGACTGGGACACCTTAACCACGGGGAGAGGAGAGAAAGTGGGCCTGGCCAGTGGGCCGAGCAGGGGTCGGAGCCGACCTGGTCGG
CTCGATCTTCCCTTTGTCGTTGCTTGGTTGGGCCTCTCTAGTCTGGAGAGGCCTATATCTTTGATTGATTTCTGTCTCATAACAGTTGCCCCCTTCTATCAAGATGGATG
A
Protein sequenceShow/hide protein sequence
MQVFIGRVDVPIWIPTPSGLFSVSSVWGVLRSTRHPVPWFSLIWFGGNILKHSFIAWLAVRDRLATRDRLCLLLTGFHIGLLSLLRLVTLAPGSLLVVVYGAWLGLELFL
LSGGSVMLEFIHVGYNSITVAPTLEMMLFQSSDLIISRVHLQVLEYPGSAFAKITIVGVGEGQCHLLIEPIQSVATRSHGYMDWDTLTTGRGEKVGLASGPSRGRSRPGR
LDLPFVVAWLGLSSLERPISLIDFCLITVAPFYQDG