; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g18930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g18930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr11:14418932..14422219
RNA-Seq ExpressionMoc11g18930
SyntenyMoc11g18930
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.4e-0844.44Show/hide
Query:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS
        RHPP+QLA +  ++  +       N+ WL D+ CN H+T+  ANL++S+ YNGEE VTV++ Q L++ +TGS
Subjt:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0848.68Show/hide
Query:  DRHPPAQLATLAA----STSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL
        DRH P+QLA +A     S  ++   N+ WLSD+  N H+T+  ANL++S+ YNGEE VTV +GQ L++ +TGSG L
Subjt:  DRHPPAQLATLAA----STSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL

KAA8519478.1 hypothetical protein F0562_013734 [Nyssa sinensis]6.1e-0741.79Show/hide
Query:  RHPPAQLATLAASTSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTG
        RHPPA LA +A +      D+  WL+D+  N H+T++ +NL +S  Y+GE +V V +G +L ++HTG
Subjt:  RHPPAQLATLAASTSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTG

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.4e-0844.44Show/hide
Query:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS
        RHPP+QLA +  ++  +       N+ WL D+ CN H+T+  ANL++S+ YNGEE VTV++ Q L++ +TGS
Subjt:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]9.4e-0844.74Show/hide
Query:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTLL
        +HPP+QL  +A ++  +       N+  LSD+ CN H+T+  ANL++S+ YNGEE VTV +GQ +++ +TGSG LL
Subjt:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTLL

TrEMBL top hitse value%identityAlignment
A0A2N9FT50 Uncharacterized protein4.1e-0936.84Show/hide
Query:  VSWETLLKLMIVGTRLAEPS---------LTHLGSTAVMTWRGLDRGGITSRVSEDRGKGRL----VDRHPPAQLATLAASTSTTPRDNSCWLSDTRCNT
        V +E L  LMI   +L + S         +    +TA  T RG +RGG  SR   ++  G +      RHPP +LAT+A++TS +P    CW+SDT    
Subjt:  VSWETLLKLMIVGTRLAEPS---------LTHLGSTAVMTWRGLDRGGITSRVSEDRGKGRL----VDRHPPAQLATLAASTSTTPRDNSCWLSDTRCNT

Query:  HLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTH
        H T + ANL  S  YN  + V+V +GQ L ++H
Subjt:  HLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTH

A0A2N9I1S1 Uncharacterized protein3.5e-0847.89Show/hide
Query:  RHPPAQLATLAASTSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL
        RHPPA+LA + ASTS   +    WL+DT    HLT+N  NL+V   Y G +QV V +GQ++ + HTG+G L
Subjt:  RHPPAQLATLAASTSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL

A0A5A7U7J4 Putative mitochondrial protein4.6e-0844.44Show/hide
Query:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS
        RHPP+QLA +  ++  +       N+ WL D+ CN H+T+  ANL++S+ YNGEE VTV++ Q L++ +TGS
Subjt:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS

A0A5A7VGG0 Retrotransposon protein5.4e-0948.68Show/hide
Query:  DRHPPAQLATLAA----STSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL
        DRH P+QLA +A     S  ++   N+ WLSD+  N H+T+  ANL++S+ YNGEE VTV +GQ L++ +TGSG L
Subjt:  DRHPPAQLATLAA----STSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL

A0A5D3C579 Putative mitochondrial protein4.6e-0844.44Show/hide
Query:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS
        RHPP+QLA +  ++  +       N+ WL D+ CN H+T+  ANL++S+ YNGEE VTV++ Q L++ +TGS
Subjt:  RHPPAQLATLAASTSTT----PRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGS

SwissProt top hitse value%identityAlignment
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.0e-0440Show/hide
Query:  TPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL
        +P + + WL D+    H+TS+F NLS    Y G + V +  G T+ +THTGS +L
Subjt:  TPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGEEQVTVDSGQTLHMTHTGSGTL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACATAAGTGGGTTTCTTGGGAGACTCTACTCAAACTGATGATAGTTGGTACCAGGTTAGCAGAGCCAAGTCTCACCCACCTAGGGTCGACCGCGGTGATGACGTG
GAGAGGGCTTGACCGAGGAGGGATCACTAGTCGAGTTAGTGAGGATAGAGGGAAGGGTCGTTTGGTTGATCGCCATCCTCCAGCTCAACTTGCCACCCTTGCCGCCTCCA
CTTCTACAACTCCTAGAGACAATTCCTGTTGGCTATCTGACACTAGATGCAACACCCATTTGACCTCTAACTTTGCAAACTTGTCAGTCTCGCACAAGTACAACGGTGAA
GAACAGGTTACTGTCGATAGTGGTCAAACCTTGCACATGACGCACACAGGTTCTGGCACCTTACTACCCTTTCTTCCTCCTTTACTCTTAACAATCTTTTCCTTGTTCCC
ACTATTACGTCCAACTTACTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTACATAAGTGGGTTTCTTGGGAGACTCTACTCAAACTGATGATAGTTGGTACCAGGTTAGCAGAGCCAAGTCTCACCCACCTAGGGTCGACCGCGGTGATGACGTG
GAGAGGGCTTGACCGAGGAGGGATCACTAGTCGAGTTAGTGAGGATAGAGGGAAGGGTCGTTTGGTTGATCGCCATCCTCCAGCTCAACTTGCCACCCTTGCCGCCTCCA
CTTCTACAACTCCTAGAGACAATTCCTGTTGGCTATCTGACACTAGATGCAACACCCATTTGACCTCTAACTTTGCAAACTTGTCAGTCTCGCACAAGTACAACGGTGAA
GAACAGGTTACTGTCGATAGTGGTCAAACCTTGCACATGACGCACACAGGTTCTGGCACCTTACTACCCTTTCTTCCTCCTTTACTCTTAACAATCTTTTCCTTGTTCCC
ACTATTACGTCCAACTTACTTTTAG
Protein sequenceShow/hide protein sequence
MVHKWVSWETLLKLMIVGTRLAEPSLTHLGSTAVMTWRGLDRGGITSRVSEDRGKGRLVDRHPPAQLATLAASTSTTPRDNSCWLSDTRCNTHLTSNFANLSVSHKYNGE
EQVTVDSGQTLHMTHTGSGTLLPFLPPLLLTIFSLFPLLRPTYF