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Moc11g25480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g25480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr11:18652192..18654048
RNA-Seq ExpressionMoc11g25480
SyntenyMoc11g25480
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0557.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0557.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0557.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

TYK26319.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0557.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

TYK26319.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein6.4e-0657.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

A0A5A7SMH8 Gag/pol protein2.3e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

A0A5A7V4M1 Gag/pol protein6.4e-0657.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

A0A5D3CPJ6 Gag/pol protein1.8e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

A0A5D3CPJ6 Gag/pol protein6.4e-0657.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

A0A5D3CPJ6 Gag/pol protein1.8e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

A0A5D3CSZ6 Gag/pol protein6.4e-0657.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

A0A5D3CSZ6 Gag/pol protein2.3e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

A0A5D3DS88 Gag/pol protein6.4e-0657.63Show/hide
Query:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP
        EEDHIR+HKP+SK+VLNE+S E T  S RVV++ S+ TRVV   S++R +H  Q LR P
Subjt:  EEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP

A0A5D3DS88 Gag/pol protein1.8e-2461.86Show/hide
Query:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG
        M+KI Y  TTLL EL  F+SLMK  GQ+GEANV TS ++FHRGSTSGTKS  SSS +K +KKK   G+G KA+  A   TKK KA    KG CF CN +G
Subjt:  MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTS-KRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDG

Query:  HWKKNCLKYLTEKKKAKE
        HWK+NC KYL EKKKAK+
Subjt:  HWKKNCLKYLTEKKKAKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGATAGAGTACAACTTTACCACGCTCTTAATTGAGCTACATATTTTTCAATCTCTTATGAAAAATAATGGACAGGAAGGGGAGGCAAACGTTGTCACC
TCAAAACGGTTCCATCGAGGTTCGACCTCAGGAACCAAATCTGCACTTTCTTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAACAACAACGGTAAGGGGATGAAA
GCTAGCCCTACTGCTACTAATGCTACCAAGAAGGACAAGGCCAAAGTTGCAGACAAAGGAAAATGTTTCGACTGCAACATGGATGGGCACTGGAAAAAAAACTGC
CTGAAATACTTGACCGAAAAGAAGAAAGCCAAAGAAGAAGACCACATTAGAGATCATAAACCACAAAGCAAGGTTGTGTTAAATGAGATTTCTGATGAAGCTACA
AATACATCAATAAGAGTTGTTGATAAAGCTAGCAGTTCAACAAGAGTTGTTGATGGCGCTAGTACATCACGTGAGTCACATCCATCTCAAAAGTTGAGAGTGCCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGATAGAGTACAACTTTACCACGCTCTTAATTGAGCTACATATTTTTCAATCTCTTATGAAAAATAATGGACAGGAAGGGGAGGCAAACGTTGTCACC
TCAAAACGGTTCCATCGAGGTTCGACCTCAGGAACCAAATCTGCACTTTCTTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAACAACAACGGTAAGGGGATGAAA
GCTAGCCCTACTGCTACTAATGCTACCAAGAAGGACAAGGCCAAAGTTGCAGACAAAGGAAAATGTTTCGACTGCAACATGGATGGGCACTGGAAAAAAAACTGC
CTGAAATACTTGACCGAAAAGAAGAAAGCCAAAGAAGAAGACCACATTAGAGATCATAAACCACAAAGCAAGGTTGTGTTAAATGAGATTTCTGATGAAGCTACA
AATACATCAATAAGAGTTGTTGATAAAGCTAGCAGTTCAACAAGAGTTGTTGATGGCGCTAGTACATCACGTGAGTCACATCCATCTCAAAAGTTGAGAGTGCCT
TGA
Protein sequenceShow/hide protein sequence
MDKIEYNFTTLLIELHIFQSLMKNNGQEGEANVVTSKRFHRGSTSGTKSALSSSRSKTFKKKNNNGKGMKASPTATNATKKDKAKVADKGKCFDCNMDGHWKKNC
LKYLTEKKKAKEEDHIRDHKPQSKVVLNEISDEATNTSIRVVDKASSSTRVVDGASTSRESHPSQKLRVP