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Moc11g25630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g25630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:18756843..18758053
RNA-Seq ExpressionMoc11g25630
SyntenyMoc11g25630
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65504.1 hypothetical protein VITISV_028342 [Vitis vinifera]1.5e-2134.25Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLN-KALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKAL----------------------
        I KFDG +F YW+MQI++YL  +KL+   L  + E MK E+W   + Q +  IRL LS  VA  V  E T  DLMKAL                      
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLN-KALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKAL----------------------

Query:  -----------------ENKYEKSSTNIR---KGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQW
                         E     S+ N+    KG+ G V + +G      G+G++R+   +G+  LL +VR++P++R NLI  G+LDD+G+   F G  W
Subjt:  -----------------ENKYEKSSTNIR---KGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQW

Query:  KLTKGSMLVAVGHRRSTVY
        K+TKG  ++A G +  T+Y
Subjt:  KLTKGSMLVAVGHRRSTVY

KAE8730942.1 Major allergen Pru ar 1 [Hibiscus syriacus]7.4e-2131.43Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLNKALKVRL-EGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSSTNIR----------
        I KFDGA+F +W M I+++L  K L + L  +  EGMK+EDW   + QA+  IRL LS NVA  +A E T + LM AL + YEK S + +          
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLNKALKVRL-EGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSSTNIR----------

Query:  -------KGNR-------------------------------------------GHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLIS
                GN                                            G V + +    K  G G+IRLK  + T  +L+ VR++P ++ NLIS
Subjt:  -------KGNR-------------------------------------------GHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLIS

Query:  TGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAG
         G+LD +GY + F G +WK+ KG++++A G +        +S  G
Subjt:  TGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAG

PKI65478.1 hypothetical protein CRG98_014136 [Punica granatum]5.6e-2135.03Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLNKALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTA---------IDLMKALENKYEKSST-----
        I KFDG+++ +W+MQI++YL  K L + L+ +  GM + +W   + +A++ IRL LS NVA   A E T          + +   LE+    S       
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLNKALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTA---------IDLMKALENKYEKSST-----

Query:  -------NIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVY
               N   GN G V + +    +  G G++R+KT +G    LR VR++P ++ NLIS G LDD+GY   F  + WK+ KG+M+VA G +  T+Y
Subjt:  -------NIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVY

VFQ81805.1 unnamed protein product [Cuscuta campestris]7.9e-3141.97Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST------NIRKGNR
        I KFDG++F +WKMQI++ L  K L + L   + E M D DW   + +A+  +RL L+ +VA  + NETT   LMKAL N YEK S       N++ G+ 
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST------NIRKGNR

Query:  GHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGS
        G VR+GN  +    G+G+I LKT+ G    L++VR +PS++  LIS G+LDD G    F G QWK+ KG+++VA G +R ++Y  ++   G S
Subjt:  GHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGS

VFQ87379.1 unnamed protein product [Cuscuta campestris]3.9e-2237.37Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST-------------
        I KFDG +F +WKMQ+++ L  K L   L   + E MKDE+W + + +A+A IR  L+ +VA  +  ETTA  +M  L N YEK S              
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST-------------

Query:  ----------------------NIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKG
                              N+R+GN G V + N +     G+G+I LKTN GT   L+DVR +P +R  LIS  +LDD GY   F   QWK+ KG
Subjt:  ----------------------NIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKG

TrEMBL top hitse value%identityAlignment
A0A484LZI6 Uncharacterized protein3.8e-3141.97Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST------NIRKGNR
        I KFDG++F +WKMQI++ L  K L + L   + E M D DW   + +A+  +RL L+ +VA  + NETT   LMKAL N YEK S       N++ G+ 
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST------NIRKGNR

Query:  GHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGS
        G VR+GN  +    G+G+I LKT+ G    L++VR +PS++  LIS G+LDD G    F G QWK+ KG+++VA G +R ++Y  ++   G S
Subjt:  GHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGS

A0A484MFZ5 Uncharacterized protein1.9e-2237.37Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST-------------
        I KFDG +F +WKMQ+++ L  K L   L   + E MKDE+W + + +A+A IR  L+ +VA  +  ETTA  +M  L N YEK S              
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLNKALK-VRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSST-------------

Query:  ----------------------NIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKG
                              N+R+GN G V + N +     G+G+I LKTN GT   L+DVR +P +R  LIS  +LDD GY   F   QWK+ KG
Subjt:  ----------------------NIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKG

A0A7N2MPZ5 Uncharacterized protein1.2e-2136.68Show/hide
Query:  EKSGFQGIMKFDGANFEYWKMQIKNYLTCKKLN-----KALKVRLEGMKDEDWVETNEQAVAF----IRLCLSLNVASLVANETTAIDLMKALENKYEKS
        E+    GI KFDG +F YWKMQI++YL  KKL+     K LK ++E     +  E N  A+ F    + L L +  +  VA       +  A  +    +
Subjt:  EKSGFQGIMKFDGANFEYWKMQIKNYLTCKKLN-----KALKVRLEGMKDEDWVETNEQAVAF----IRLCLSLNVASLVANETTAIDLMKALENKYEKS

Query:  S---TNIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQL
            T  + GN G V+MGN   SK  GIG++ +KTN G  L+L+DVR+VP +RMN+ ST  +D  GY       +WKL+KG ++VA G     +Y + +
Subjt:  S---TNIRKGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQL

A0A7N2R217 Integrase catalytic domain-containing protein6.5e-2338.67Show/hide
Query:  GIMKFDGANFEYWKMQIKNYLTCKKLN-KALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSSTNIRKGNRGHVRM
        GI KFD  NF +W++QI++YL  +KL+   L  + E MK E+W   + Q +  IRL LS +VA  V  E T   LMKAL      S+  IR+ + G    
Subjt:  GIMKFDGANFEYWKMQIKNYLTCKKLN-KALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSSTNIRKGNRGHVRM

Query:  GNGRL---SKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVY
            L   ++ +G+G++R+   +G+  LL  V+++P++R NLIS G+LDD+G+   F G+ WK+TKG+ ++A G +  T+Y
Subjt:  GNGRL---SKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVY

A5BD56 Uncharacterized protein7.2e-2234.25Show/hide
Query:  IMKFDGANFEYWKMQIKNYLTCKKLN-KALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKAL----------------------
        I KFDG +F YW+MQI++YL  +KL+   L  + E MK E+W   + Q +  IRL LS  VA  V  E T  DLMKAL                      
Subjt:  IMKFDGANFEYWKMQIKNYLTCKKLN-KALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKAL----------------------

Query:  -----------------ENKYEKSSTNIR---KGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQW
                         E     S+ N+    KG+ G V + +G      G+G++R+   +G+  LL +VR++P++R NLI  G+LDD+G+   F G  W
Subjt:  -----------------ENKYEKSSTNIR---KGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQW

Query:  KLTKGSMLVAVGHRRSTVY
        K+TKG  ++A G +  T+Y
Subjt:  KLTKGSMLVAVGHRRSTVY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1950.52Show/hide
Query:  GNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGSL
        G+ G V+MGN   SK  GIG+I +KTN G  L+L+DVR+VP +RMNLIS   LD DGY+S F   +W+LTKGS+++A G  R T+Y +   +  G L
Subjt:  GNRGHVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGSL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAGTAGAGAAGTCAGGTTTTCAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGAATTACTTGACCTGCAAGAAG
TTGAATAAAGCTTTAAAGGTACGACTAGAAGGGATGAAAGATGAAGATTGGGTAGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTGTGTTTATCGCTGAAT
GTGGCAAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTAGAGAATAAGTACGAGAAATCCTCAACTAATATAAGAAAAGGCAATCGCGGC
CACGTGAGGATGGGGAATGGAAGACTTTCCAAAACTAAAGGGATTGGAAATATACGATTGAAAACCAATAGTGGGACTCAGTTATTACTGCGAGATGTCAGGTAT
GTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATCAGAGTGACTTTCGTGGGAACCAGTGGAAACTCACCAAAGGATCCATG
TTGGTGGCAGTTGGCCATAGAAGATCTACAGTTTACACGTCGCAGTTGAGTGTTGCTGGAGGATCATTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCAGTAGAGAAGTCAGGTTTTCAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGAATTACTTGACCTGCAAGAAG
TTGAATAAAGCTTTAAAGGTACGACTAGAAGGGATGAAAGATGAAGATTGGGTAGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTGTGTTTATCGCTGAAT
GTGGCAAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTAGAGAATAAGTACGAGAAATCCTCAACTAATATAAGAAAAGGCAATCGCGGC
CACGTGAGGATGGGGAATGGAAGACTTTCCAAAACTAAAGGGATTGGAAATATACGATTGAAAACCAATAGTGGGACTCAGTTATTACTGCGAGATGTCAGGTAT
GTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATCAGAGTGACTTTCGTGGGAACCAGTGGAAACTCACCAAAGGATCCATG
TTGGTGGCAGTTGGCCATAGAAGATCTACAGTTTACACGTCGCAGTTGAGTGTTGCTGGAGGATCATTGAAATAG
Protein sequenceShow/hide protein sequence
MGSVEKSGFQGIMKFDGANFEYWKMQIKNYLTCKKLNKALKVRLEGMKDEDWVETNEQAVAFIRLCLSLNVASLVANETTAIDLMKALENKYEKSSTNIRKGNRG
HVRMGNGRLSKTKGIGNIRLKTNSGTQLLLRDVRYVPSIRMNLISTGKLDDDGYQSDFRGNQWKLTKGSMLVAVGHRRSTVYTSQLSVAGGSLK