; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g25770 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g25770
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr11:18866785..18868479
RNA-Seq ExpressionMoc11g25770
SyntenyMoc11g25770
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-1142Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
        K  NIKKG+  +K+Y  ++   VD+L +  + V+ +DH+LYIL+GLG +Y+S ISVI+ ++   SVQ+  SLLL+ ES+ +  +    + ++ LPSVN+V
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]1.0e-1753.47Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
        K +NIKKGN  +KDY ++VK+LVDSL A G+ VT EDH+++IL+GL  E+EST+SVI+ ++   ++Q+  SLLLSHE R +++   T   D TLPSVNL 
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV

Query:  Q
        Q
Subjt:  Q
XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]1.0e-1753.47Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
        K +NIKKGN  +KDY ++VK+LVDSL A G+ VT EDH+++IL+GL  E+EST+SVI+ ++   ++Q+  SLLLSHE R +++   T   D TLPSVNL 
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV

Query:  Q
        Q
Subjt:  Q
XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]3.5e-1344.44Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNL
        K +N KKGN ++KDY  ++K+LVDSL   G+ ++ EDH+++IL+GLG E+++ ISVIT ++   ++Q+  SLLL  E R ++++  +   D +LPSVNL
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNL
XP_022158089.1 uncharacterized protein LOC111024658 [Momordica charantia]1.5e-1948.65Show/hide
Query:  TVKLTDNNFLLWKFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTN
        T  LT    L  + QN++KG  ++K+Y+RQ+K+LVDSL A G+ +  EDH+++ILSGLG EYEST+SVIT + G +++Q  T+LLLSH+ R++K+++   
Subjt:  TVKLTDNNFLLWKFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTN

Query:  VKDSTLPSVNL
         KD TLPS ++
Subjt:  VKDSTLPSVNL
TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-1242Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
        K  NIKKG+  +K+Y  ++   VD+L +  + V+ +DH+LYIL+GLG +Y+S ISVI+ ++   SVQ+  SLLL+ ES+ +  +    + ++ LPSVN+V
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
A0A6J1C6N9 dr1-associated corepressor homolog isoform X15.1e-1853.47Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
        K +NIKKGN  +KDY ++VK+LVDSL A G+ VT EDH+++IL+GL  E+EST+SVI+ ++   ++Q+  SLLLSHE R +++   T   D TLPSVNL 
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV

Query:  Q
        Q
Subjt:  Q
A0A6J1C8R2 dr1-associated corepressor homolog isoform X25.1e-1853.47Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV
        K +NIKKGN  +KDY ++VK+LVDSL A G+ VT EDH+++IL+GL  E+EST+SVI+ ++   ++Q+  SLLLSHE R +++   T   D TLPSVNL 
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLV

Query:  Q
        Q
Subjt:  Q
A0A6J1DLT9 uncharacterized protein LOC1110217571.7e-1344.44Show/hide
Query:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNL
        K +N KKGN ++KDY  ++K+LVDSL   G+ ++ EDH+++IL+GLG E+++ ISVIT ++   ++Q+  SLLL  E R ++++  +   D +LPSVNL
Subjt:  KFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNL
A0A6J1DYD5 uncharacterized protein LOC1110246587.1e-2048.65Show/hide
Query:  TVKLTDNNFLLWKFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTN
        T  LT    L  + QN++KG  ++K+Y+RQ+K+LVDSL A G+ +  EDH+++ILSGLG EYEST+SVIT + G +++Q  T+LLLSH+ R++K+++   
Subjt:  TVKLTDNNFLLWKFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTN

Query:  VKDSTLPSVNL
         KD TLPS ++
Subjt:  VKDSTLPSVNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)1.8e-0431.17Show/hide
Query:  GNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDV
        G+  + DY R++K L DSL      VT  + V+Y+L+GL  ++++ I+VI  +    S   A ++L   E R+ + +
Subjt:  GNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGGCGGCGGGACGGTAGATCTAGTTTGGGACGTGGCGCATCAAGCACATATGGTACGGGTGGCGGCCAACGGGGAGGGTGGCGGCGGTTGGGTGCGACG
GTGACCGATATAATTTTGGTTCGTGGACGGTGGCGTGAAGGTGAGCGGCGCATGGATCTGCTTCGTGAGAGCTCTCAAACGTCTAACGACGATTCAAGAAATATG
ACAGACTCTATAGAAGAGAATTCTGAAGTCACTACGAGCCAAGGATTCACGTTGATCAATCCGGGCAATAAAATCAATACAGTAAAGCTGACAGACAACAATTTC
CTATTATGGAAGTTTCAGAATATCAAGAAAGGTAATTCTACTATTAAAGACTATGTTCGACAAGTTAAGAGCTTAGTTGATTCTTTACTAGCTACGGGACAACTA
GTCACACCAGAGGATCACGTTCTTTACATTCTATCCGGATTAGGATTAGAATATGAGTCAACCATTTCAGTAATTACAACACAATCAGGTGAAGTTTCAGTACAA
AAAGCTACTTCATTACTACTATCTCATGAAAGTAGAATGGATAAAGATGTGGCTCAAACAAATGTAAAGGATTCAACACTACCATCAGTAAATCTTGTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGGCGGCGGGACGGTAGATCTAGTTTGGGACGTGGCGCATCAAGCACATATGGTACGGGTGGCGGCCAACGGGGAGGGTGGCGGCGGTTGGGTGCGACG
GTGACCGATATAATTTTGGTTCGTGGACGGTGGCGTGAAGGTGAGCGGCGCATGGATCTGCTTCGTGAGAGCTCTCAAACGTCTAACGACGATTCAAGAAATATG
ACAGACTCTATAGAAGAGAATTCTGAAGTCACTACGAGCCAAGGATTCACGTTGATCAATCCGGGCAATAAAATCAATACAGTAAAGCTGACAGACAACAATTTC
CTATTATGGAAGTTTCAGAATATCAAGAAAGGTAATTCTACTATTAAAGACTATGTTCGACAAGTTAAGAGCTTAGTTGATTCTTTACTAGCTACGGGACAACTA
GTCACACCAGAGGATCACGTTCTTTACATTCTATCCGGATTAGGATTAGAATATGAGTCAACCATTTCAGTAATTACAACACAATCAGGTGAAGTTTCAGTACAA
AAAGCTACTTCATTACTACTATCTCATGAAAGTAGAATGGATAAAGATGTGGCTCAAACAAATGTAAAGGATTCAACACTACCATCAGTAAATCTTGTTCAATAG
Protein sequenceShow/hide protein sequence
MVGRRDGRSSLGRGASSTYGTGGGQRGGWRRLGATVTDIILVRGRWREGERRMDLLRESSQTSNDDSRNMTDSIEENSEVTTSQGFTLINPGNKINTVKLTDNNF
LLWKFQNIKKGNSTIKDYVRQVKSLVDSLLATGQLVTPEDHVLYILSGLGLEYESTISVITTQSGEVSVQKATSLLLSHESRMDKDVAQTNVKDSTLPSVNLVQ