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Moc11g25780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g25780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:18875925..18876513
RNA-Seq ExpressionMoc11g25780
SyntenyMoc11g25780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8523936.1 hypothetical protein F0562_010359 [Nyssa sinensis]3.1e-0930.53Show/hide
Query:  GHTIDAITNCNEFPPGQTAMNSSTFSSS------------------GSSSNVNSNAV----------LNSQLNATKSDVETSSSYMASTYY---VSHSYH
        GHT+D     + +PPG    +++ F+++                  G   N+NSN            L+S    T +   + ++ +A   +   +S  + 
Subjt:  GHTIDAITNCNEFPPGQTAMNSSTFSSS------------------GSSSNVNSNAV----------LNSQLNATKSDVETSSSYMASTYY---VSHSYH

Query:  VARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYINIFS
          + WI+DSGA+ HIC Q   FVSL  + +TIV LPN + + VHF G V+L    ++++VL+VPQF +NL+SV AL     +  +   FS
Subjt:  VARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYINIFS

KYP45328.1 hypothetical protein KK1_033114 [Cajanus cajan]1.2e-0837.67Show/hide
Query:  GHTIDAITNCNEFPPGQTAMNSSTFSSSGSSSNVNSNAVLNSQLNATKSDVETSSSYMASTYYVSHSYHVARK-WIIDSGASGHICFQRELFVSLLPVNT
        GHT+D     + FPP        +  S GS+S+V  N  LN +      D E  S+   +TY   +S   +   WI+D GAS HIC   E FVS   +  
Subjt:  GHTIDAITNCNEFPPGQTAMNSSTFSSSGSSSNVNSNAVLNSQLNATKSDVETSSSYMASTYYVSHSYHVARK-WIIDSGASGHICFQRELFVSLLPVNT

Query:  I-VILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL
        + V LPN   +  HF GIV +  S ++++VLYVP F +NL+SV  L
Subjt:  I-VILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL

XP_012831557.1 PREDICTED: uncharacterized protein LOC105952539 [Erythranthe guttata]1.8e-0954.17Show/hide
Query:  WIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL
        W++DSGAS HIC  R LF+ L+P  NT VILP+ + L+V F+G V+L  S  +  V YVP+F +NLLSV AL
Subjt:  WIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL

XP_022845245.1 uncharacterized protein LOC111368228 [Olea europaea var. sylvestris]2.6e-1141.28Show/hide
Query:  AVLNSQLNATKSDVETS---SSYMASTYYVSHS--YHVARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYV
        A+LNS L + K+++ T    S  + + + VS+    H  R WI+DSGA+ H+CF   LF ++ P+ N+ + LPN T ++V F G ++L  S  + +VLYV
Subjt:  AVLNSQLNATKSDVETS---SSYMASTYYVSHS--YHVARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYV

Query:  PQFLYNLLS
        PQF +NLLS
Subjt:  PQFLYNLLS

XP_022867559.1 uncharacterized protein LOC111387248 [Olea europaea var. sylvestris]3.9e-1232.97Show/hide
Query:  GHTIDAITNCNEFPPGQTAMNSSTFSSSG---------SSSNVNSN----------------AVLNSQLNATKSDVETSSSYMAS---TYYVSH--SYHV
        GH+I+     + +PPG       ++S+ G          SSN   N                 +LN  L + K+  E     + +   ++ VS+  + H 
Subjt:  GHTIDAITNCNEFPPGQTAMNSSTFSSSG---------SSSNVNSN----------------AVLNSQLNATKSDVETSSSYMAS---TYYVSH--SYHV

Query:  ARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQ
         R WI+DS A+ H+CF + LF +L+P+ N+   LPN T + V+F GI+R+  S I+ +VLYVPQF +NLLSV +L  + S+Q
Subjt:  ARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQ

TrEMBL top hitse value%identityAlignment
A0A151RS23 Uncharacterized protein5.8e-0937.67Show/hide
Query:  GHTIDAITNCNEFPPGQTAMNSSTFSSSGSSSNVNSNAVLNSQLNATKSDVETSSSYMASTYYVSHSYHVARK-WIIDSGASGHICFQRELFVSLLPVNT
        GHT+D     + FPP        +  S GS+S+V  N  LN +      D E  S+   +TY   +S   +   WI+D GAS HIC   E FVS   +  
Subjt:  GHTIDAITNCNEFPPGQTAMNSSTFSSSGSSSNVNSNAVLNSQLNATKSDVETSSSYMASTYYVSHSYHVARK-WIIDSGASGHICFQRELFVSLLPVNT

Query:  I-VILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL
        + V LPN   +  HF GIV +  S ++++VLYVP F +NL+SV  L
Subjt:  I-VILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL

A0A2Z7A271 Integrase catalytic domain-containing protein1.3e-0844.21Show/hide
Query:  ETSSSYMASTYYV--SHSYHVARKWIIDSGASGHICFQRELFVSLLPVNTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL
        E+S+S    TY +  SH+      WIID+GA+ HIC     FVS  P N+ V LPN+ ++ V  IG V L    I++ VL+VPQF +NLLS+ +L
Subjt:  ETSSSYMASTYYV--SHSYHVARKWIIDSGASGHICFQRELFVSLLPVNTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL

A0A2Z7C0E8 Integrase catalytic domain-containing protein1.3e-0844.21Show/hide
Query:  ETSSSYMASTYYV--SHSYHVARKWIIDSGASGHICFQRELFVSLLPVNTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL
        E+S+S    TY +  SH+      WIID+GA+ HIC     FVS  P N+ V LPN+ ++ V  IG V L    I++ VL+VPQF +NLLS+ +L
Subjt:  ETSSSYMASTYYV--SHSYHVARKWIIDSGASGHICFQRELFVSLLPVNTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIAL

A0A5J5A1K4 Retrotrans_gag domain-containing protein1.5e-0930.53Show/hide
Query:  GHTIDAITNCNEFPPGQTAMNSSTFSSS------------------GSSSNVNSNAV----------LNSQLNATKSDVETSSSYMASTYY---VSHSYH
        GHT+D     + +PPG    +++ F+++                  G   N+NSN            L+S    T +   + ++ +A   +   +S  + 
Subjt:  GHTIDAITNCNEFPPGQTAMNSSTFSSS------------------GSSSNVNSNAV----------LNSQLNATKSDVETSSSYMASTYY---VSHSYH

Query:  VARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYINIFS
          + WI+DSGA+ HIC Q   FVSL  + +TIV LPN + + VHF G V+L    ++++VL+VPQF +NL+SV AL     +  +   FS
Subjt:  VARKWIIDSGASGHICFQRELFVSLLPV-NTIVILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYINIFS

A0A803QGJ5 Uncharacterized protein3.4e-0932.79Show/hide
Query:  MIGHTIDAITNCNEFPPG--------QTAMNSSTFSSSGSSSNVNSNAVL------------------NSQLNATKSDVETSSSYMASTYYVSHSYHVAR
        M GHTI+     + +PPG          A N    S    S   +SN +L                  N+ L A  S+  T SS +  T Y        +
Subjt:  MIGHTIDAITNCNEFPPG--------QTAMNSSTFSSSGSSSNVNSNAVL------------------NSQLNATKSDVETSSSYMASTYYVSHSYHVAR

Query:  KWIIDSGASGHICFQRELFVSLLPVNTI-VILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYI
         WI+DSGA+ HIC   + F S+  VNT  +ILPN  H+ VH  G VRL  + ++++VLYVP F YN++S IA     +  +++
Subjt:  KWIIDSGASGHICFQRELFVSLLPVNTI-VILPNTTHLNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTCACACAATTGATGCTATTACAAATTGCAACGAATTTCCTCCAGGTCAAACTGCCATGAATTCCTCGACTTTTTCGAGTTCTGGTTCATCATCCAATGTGAA
TTCAAATGCAGTACTCAATTCACAACTTAATGCAACAAAATCAGATGTTGAAACCTCTTCGTCATATATGGCAAGTACATATTATGTATCTCATTCTTATCATGTTGCTA
GAAAATGGATTATTGATTCTGGCGCATCAGGACATATTTGTTTTCAGAGAGAGTTATTTGTCTCTTTATTGCCAGTTAACACTATAGTCATCTTACCAAACACTACCCAC
CTTAATGTGCATTTTATTGGCATTGTGCGATTGCCTGGTTCATTCATAATACGAGAAGTTTTATATGTTCCTCAATTTCTGTATAACTTGCTCTCTGTCATTGCACTAAG
ACTGTCTGTTTCTATTCAGACATACATCAACATATTCTCAAATAAAGGAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTCACACAATTGATGCTATTACAAATTGCAACGAATTTCCTCCAGGTCAAACTGCCATGAATTCCTCGACTTTTTCGAGTTCTGGTTCATCATCCAATGTGAA
TTCAAATGCAGTACTCAATTCACAACTTAATGCAACAAAATCAGATGTTGAAACCTCTTCGTCATATATGGCAAGTACATATTATGTATCTCATTCTTATCATGTTGCTA
GAAAATGGATTATTGATTCTGGCGCATCAGGACATATTTGTTTTCAGAGAGAGTTATTTGTCTCTTTATTGCCAGTTAACACTATAGTCATCTTACCAAACACTACCCAC
CTTAATGTGCATTTTATTGGCATTGTGCGATTGCCTGGTTCATTCATAATACGAGAAGTTTTATATGTTCCTCAATTTCTGTATAACTTGCTCTCTGTCATTGCACTAAG
ACTGTCTGTTTCTATTCAGACATACATCAACATATTCTCAAATAAAGGAGACTAA
Protein sequenceShow/hide protein sequence
MIGHTIDAITNCNEFPPGQTAMNSSTFSSSGSSSNVNSNAVLNSQLNATKSDVETSSSYMASTYYVSHSYHVARKWIIDSGASGHICFQRELFVSLLPVNTIVILPNTTH
LNVHFIGIVRLPGSFIIREVLYVPQFLYNLLSVIALRLSVSIQTYINIFSNKGD