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Moc11g26480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g26480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr11:19538122..19538454
RNA-Seq ExpressionMoc11g26480
SyntenyMoc11g26480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.2e-0633.06Show/hide
Query:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ
        ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+  G  +PM M+PT G+  Y +             +SL + 
Subjt:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ

Query:  YGCGG----RHGRGRGEHGQY
         G        H RG GEH +Y
Subjt:  YGCGG----RHGRGRGEHGQY

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.2e-0633.06Show/hide
Query:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ
        ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+  G  +PM M+PT G+  Y +             +SL + 
Subjt:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ

Query:  YGCGG----RHGRGRGEHGQY
         G        H RG GEH +Y
Subjt:  YGCGG----RHGRGRGEHGQY

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.4e-0531.15Show/hide
Query:  EINTLCNVGGKHLHSLHQMYK---VSTPAHGPRHR---GRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS-------------------SKYHTA
        ++  +CN   +++  +H +Y    V  P H  R R      + +YH VE++PP TQTQ+  G  +PM M+PT G+                   S Y   
Subjt:  EINTLCNVGGKHLHSLHQMYK---VSTPAHGPRHR---GRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS-------------------SKYHTA

Query:  SLPLQYGCGGRHGRGRGEHGQY
             Y  G  HGRG GEH +Y
Subjt:  SLPLQYGCGGRHGRGRGEHGQY

XP_022149984.1 serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia]9.1e-1366.67Show/hide
Query:  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS
        MY VSTPA GPR RGRR               EVIYH VEDIPPFTQTQ+DAG STPM MIPTPGS
Subjt:  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS

XP_022152034.1 disease resistance protein RGA2-like [Momordica charantia]1.4e-1851.38Show/hide
Query:  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHTASLPLQYGCGGRHGRGRGEH
        G+HL  LHQMY+V  P H    RGRR               E IYH V+ +PPF +TQND G  TPM+MIPTP SS  HT   P+QYG  G  G GRGE+
Subjt:  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHTASLPLQYGCGGRHGRGRGEH

Query:  GQYFNSTED
        GQY N  ED
Subjt:  GQYFNSTED

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.1e-0633.06Show/hide
Query:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ
        ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+  G  +PM M+PT G+  Y +             +SL + 
Subjt:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ

Query:  YGCGG----RHGRGRGEHGQY
         G        H RG GEH +Y
Subjt:  YGCGG----RHGRGRGEHGQY

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.1e-0633.06Show/hide
Query:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ
        ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+  G  +PM M+PT G+  Y +             +SL + 
Subjt:  EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHT-------------ASLPLQ

Query:  YGCGG----RHGRGRGEHGQY
         G        H RG GEH +Y
Subjt:  YGCGG----RHGRGRGEHGQY

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein6.8e-0631.15Show/hide
Query:  EINTLCNVGGKHLHSLHQMYK---VSTPAHGPRHR---GRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS-------------------SKYHTA
        ++  +CN   +++  +H +Y    V  P H  R R      + +YH VE++PP TQTQ+  G  +PM M+PT G+                   S Y   
Subjt:  EINTLCNVGGKHLHSLHQMYK---VSTPAHGPRHR---GRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS-------------------SKYHTA

Query:  SLPLQYGCGGRHGRGRGEHGQY
             Y  G  HGRG GEH +Y
Subjt:  SLPLQYGCGGRHGRGRGEHGQY

A0A6J1D8N6 serine/threonine-protein phosphatase 7 long form homolog4.4e-1366.67Show/hide
Query:  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS
        MY VSTPA GPR RGRR               EVIYH VEDIPPFTQTQ+DAG STPM MIPTPGS
Subjt:  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS

A0A6J1DEU3 disease resistance protein RGA2-like7.0e-1951.38Show/hide
Query:  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHTASLPLQYGCGGRHGRGRGEH
        G+HL  LHQMY+V  P H    RGRR               E IYH V+ +PPF +TQND G  TPM+MIPTP SS  HT   P+QYG  G  G GRGE+
Subjt:  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHTASLPLQYGCGGRHGRGRGEH

Query:  GQYFNSTED
        GQY N  ED
Subjt:  GQYFNSTED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATTCTCTCATTAGACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGC
CCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATG
ATACCGACTCCTGGTTCTAGTAAGTATCACACAGCATCTTTGCCGCTGCAGTATGGTTGTGGAGGGCGCCATGGACGTGGACGTGGAGAGCATGGACAATACTTC
AACTCTACGGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATTCTCTCATTAGACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGC
CCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATG
ATACCGACTCCTGGTTCTAGTAAGTATCACACAGCATCTTTGCCGCTGCAGTATGGTTGTGGAGGGCGCCATGGACGTGGACGTGGAGAGCATGGACAATACTTC
AACTCTACGGAGGATTGA
Protein sequenceShow/hide protein sequence
MSILSLDEINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGSSKYHTASLPLQYGCGGRHGRGRGEHGQYF
NSTED