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Moc11g27730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g27730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr11:20280969..20283732
RNA-Seq ExpressionMoc11g27730
SyntenyMoc11g27730
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]1.3e-1753.41Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID
        S  +L+V ++ EE+Q ++PRM KYL +V+  L QF  YE+ Q+PR++N NADALA+LA+ YETDL R VPVEIL  PSI     M++D
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]1.8e-3082.95Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID
        S  +LIVG+V EEFQ REPRMAKYL QV++QLDQFSKYEI QIPR QNV+ADALARLAA YETDLGR VPVEILPEPSIEAQ AMDID
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]3.5e-1869.86Show/hide
Query:  MNLGESQRCFEKKSLNEAADHSDEARPSPDHRLNPTTLDRGEPTSSLDEASNHLGEAKPSPGHRLNLTTLDKG
        MN  ES RCFE+KSL +AADH DEARPSPD +LNPTTLD GEP S L++A++  G+A+PSPG+RLN TTLDKG
Subjt:  MNLGESQRCFEKKSLNEAADHSDEARPSPDHRLNPTTLDRGEPTSSLDEASNHLGEAKPSPGHRLNLTTLDKG

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]2.2e-2879.78Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE
        S  +LIVG+V EEFQ RE RM KYL QV++QLDQFSKYEIRQIPR QNVNADALARLA TYETDLGR VPVEIL  PSIEAQ AMDID+
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]1.4e-2778.41Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID
        S  +LIVG+V E+FQ RE RMAKYL QV++QLDQFSKYEIRQIP  QNVNAD LARLA  YETDLGR VPVEILP PSIEAQ AMDID
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]4.5e-2676.4Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE
        S  +LIV +V EEFQ REPRMAKYL +VKDQL QFSK+EIRQIP TQNVNADALARLAA Y TDLGR + VEIL EPSI+AQ  MDIDE
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE

TrEMBL top hitse value%identityAlignment
A0A6J1DVC6 Ribonuclease H1.9e-3082.95Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID
        S  +LIVG+V EEFQ REPRMAKYL QV++QLDQFSKYEI QIPR QNV+ADALARLAA YETDLGR VPVEILPEPSIEAQ AMDID
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID

A0A6J1DVC6 Ribonuclease H1.7e-1869.86Show/hide
Query:  MNLGESQRCFEKKSLNEAADHSDEARPSPDHRLNPTTLDRGEPTSSLDEASNHLGEAKPSPGHRLNLTTLDKG
        MN  ES RCFE+KSL +AADH DEARPSPD +LNPTTLD GEP S L++A++  G+A+PSPG+RLN TTLDKG
Subjt:  MNLGESQRCFEKKSLNEAADHSDEARPSPDHRLNPTTLDRGEPTSSLDEASNHLGEAKPSPGHRLNLTTLDKG

A0A6J1DVC6 Ribonuclease H1.0e-2879.78Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE
        S  +LIVG+V EEFQ RE RM KYL QV++QLDQFSKYEIRQIPR QNVNADALARLA TYETDLGR VPVEIL  PSIEAQ AMDID+
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE

A0A6J1DZU0 Ribonuclease H6.8e-2878.41Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID
        S  +LIVG+V E+FQ RE RMAKYL QV++QLDQFSKYEIRQIP  QNVNAD LARLA  YETDLGR VPVEILP PSIEAQ AMDID
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID

A0A6J1E1Q5 uncharacterized protein LOC1110256232.2e-2676.4Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE
        S  +LIV +V EEFQ REPRMAKYL +VKDQL QFSK+EIRQIP TQNVNADALARLAA Y TDLGR + VEIL EPSI+AQ  MDIDE
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE

A0A6J1E3S9 uncharacterized protein LOC1110258104.9e-1853.41Show/hide
Query:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID
        S  +LIV ++ EE+Q ++PRM KYL +V+  L QF  YE+ Q+PR++N NADALA+LA+ YETDL R VP+EIL  PSI     M++D
Subjt:  SSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQNVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAAGATGACCCGTCATCGAGGCCATCACGGCGCCTCGGCACCGACTTCTCACCTTGGCCTTCAGGCCAAGGTGCAATTCGACTTCCTCTGCTCGGATCTAATGT
CAAGAGGTATCAGTTCCCGTATAATCGAGTTAGGTGTGTGCGAGGAGGCAAACTGGAGGGTCGAAATCCACACATCAACAATTGGCGCTATTTGTGGGAACGATACATCA
AAGCAAGCTTAGTAGAAACGAAATCCCGATCTGAGGCGAAACCCCGATCCGAGGAGTGTAGAGTGGAGCAAGACGACATGAATCTTGGTGAGAGCCAGCGGTGTTTCGAA
AAGAAGAGCCTGAATGAAGCGGCCGACCACTCGGATGAGGCCAGACCGAGCCCTGATCATCGACTTAATCCGACCACCCTTGACAGGGGAGAGCCAACTTCGAGCCTGGA
TGAAGCATCCAACCATTTGGGTGAGGCAAAACCGAGCCCTGGTCATCGACTTAATTTGACCACCCTTGACAAGGGAGAATCATCTGAGGAGCTGATTGTAGGTCGGGTGA
ATGAGGAGTTTCAGGTTAGAGAACCGCGAATGGCGAAATACCTTTGTCAGGTAAAAGACCAGCTCGACCAATTCTCAAAATATGAAATTCGACAAATTCCACGTACTCAA
AACGTCAACGCAGATGCGTTAGCTCGATTGGCTGCAACTTATGAAACCGACCTAGGAAGAATTGTACCAGTCGAGATTCTGCCTGAGCCAAGCATAGAAGCTCAGGGAGC
AATGGATATCGACGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAAGATGACCCGTCATCGAGGCCATCACGGCGCCTCGGCACCGACTTCTCACCTTGGCCTTCAGGCCAAGGTGCAATTCGACTTCCTCTGCTCGGATCTAATGT
CAAGAGGTATCAGTTCCCGTATAATCGAGTTAGGTGTGTGCGAGGAGGCAAACTGGAGGGTCGAAATCCACACATCAACAATTGGCGCTATTTGTGGGAACGATACATCA
AAGCAAGCTTAGTAGAAACGAAATCCCGATCTGAGGCGAAACCCCGATCCGAGGAGTGTAGAGTGGAGCAAGACGACATGAATCTTGGTGAGAGCCAGCGGTGTTTCGAA
AAGAAGAGCCTGAATGAAGCGGCCGACCACTCGGATGAGGCCAGACCGAGCCCTGATCATCGACTTAATCCGACCACCCTTGACAGGGGAGAGCCAACTTCGAGCCTGGA
TGAAGCATCCAACCATTTGGGTGAGGCAAAACCGAGCCCTGGTCATCGACTTAATTTGACCACCCTTGACAAGGGAGAATCATCTGAGGAGCTGATTGTAGGTCGGGTGA
ATGAGGAGTTTCAGGTTAGAGAACCGCGAATGGCGAAATACCTTTGTCAGGTAAAAGACCAGCTCGACCAATTCTCAAAATATGAAATTCGACAAATTCCACGTACTCAA
AACGTCAACGCAGATGCGTTAGCTCGATTGGCTGCAACTTATGAAACCGACCTAGGAAGAATTGTACCAGTCGAGATTCTGCCTGAGCCAAGCATAGAAGCTCAGGGAGC
AATGGATATCGACGAATAA
Protein sequenceShow/hide protein sequence
MPKDDPSSRPSRRLGTDFSPWPSGQGAIRLPLLGSNVKRYQFPYNRVRCVRGGKLEGRNPHINNWRYLWERYIKASLVETKSRSEAKPRSEECRVEQDDMNLGESQRCFE
KKSLNEAADHSDEARPSPDHRLNPTTLDRGEPTSSLDEASNHLGEAKPSPGHRLNLTTLDKGESSEELIVGRVNEEFQVREPRMAKYLCQVKDQLDQFSKYEIRQIPRTQ
NVNADALARLAATYETDLGRIVPVEILPEPSIEAQGAMDIDE