; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g28010 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g28010
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:20459343..20460142
RNA-Seq ExpressionMoc11g28010
SyntenyMoc11g28010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65144.1 hypothetical protein VITISV_026080 [Vitis vinifera]1.7e-2132.22Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+TE+PP D ++K W++ DARL LQ+KNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLD----VVQMYT-KPSHTKRECRKLLNKV
        + +  D +V+ AQREQ+AV+SFL G+   F+ AK Q+LS S I +           R +N   + +      D    +V  Y  +  HTK+ CRKL N+ 
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLD----VVQMYT-KPSHTKRECRKLLNKV

Query:  QKTQSAHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE
        ++ Q+A+VA +      D + K+VT+  EEF+K+ QYQ+
Subjt:  QKTQSAHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE

CAN73189.1 hypothetical protein VITISV_042346 [Vitis vinifera]1.3e-2132.13Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+TE+PP D  +K W++ DARL LQ+KNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSC--HLSLTMLWLDVVQMYT-----------KPSHTK
        + +  D +V+ AQREQ+AV+SFL G+   F+ AK Q+LS S I + +    E F+  LR+ N+S   H ++ +L  + +Q              +  HTK
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSC--HLSLTMLWLDVVQMYT-----------KPSHTK

Query:  RECRKLLNKVQKTQSAHV-----AFTLDDAGKLVTIPVEEFAKFQQYQE
        + C KL N+ ++ Q+A+V     A   D + K+VT+  EEF K+ QYQ+
Subjt:  RECRKLLNKVQKTQSAHV-----AFTLDDAGKLVTIPVEEFAKFQQYQE

RVW21056.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-2332.05Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+T++PP D ++K W++ DARL LQIKNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS
        + +  D +V+ AQREQ+ V+SFL G+   F+ AK Q+LSSS I + +    +     + + S H ++        +   +  HTK+ C+KL N+ Q+ Q+
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS

Query:  AHVA-----FTLDDAGKLVTIPVEEFAKFQQYQE
         +VA      +LD + K+VT+  +EFAK+ QYQE
Subjt:  AHVA-----FTLDDAGKLVTIPVEEFAKFQQYQE

RVX08747.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.1e-2333.33Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+TE+PP D ++K W++ DARL LQ+KNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS
        + +  D +V+ AQREQ+AV+SFL G+   F+ AK Q+LS S I ++R+ ++E++ LR  +L   LS  M  L       K    K +  KL N+ ++ Q+
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS

Query:  AHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE
        A+VA +      D + K+VT+  EEF+K+ QYQ+
Subjt:  AHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE

XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]9.1e-2335.16Show/hide
Query:  MDDHITEDPPKDESQKA-WLRGDARLILQIKNSMERDIIGIVNE-----------------------------------------------------EFN
        MDDH+TEDPPKD  QK  WLR DARL LQIKNS+E +IIG+V+                                                      E  
Subjt:  MDDHITEDPPKDESQKA-WLRGDARLILQIKNSMERDIIGIVNE-----------------------------------------------------EFN

Query:  ALLSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWL-----------------------DVV
         LL +  D KV+  QRE++AV+ FL G+ P F +AK Q+LS SKIP+          + S   S  +      L                       ++V
Subjt:  ALLSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWL-----------------------DVV

Query:  QMY-TKPSHTKRECRKLLNK-VQKTQSAHVAFTLDDAGKLVTIPVEEFAKFQQYQE
          Y  KP H KR+CRKLL K  Q++Q A +A T D     VTI  +EFAKFQ YQE
Subjt:  QMY-TKPSHTKRECRKLLNK-VQKTQSAHVAFTLDDAGKLVTIPVEEFAKFQQYQE

TrEMBL top hitse value%identityAlignment
A0A438CDF3 Retrovirus-related Pol polyprotein from transposon TNT 1-946.8e-2432.05Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+T++PP D ++K W++ DARL LQIKNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS
        + +  D +V+ AQREQ+ V+SFL G+   F+ AK Q+LSSS I + +    +     + + S H ++        +   +  HTK+ C+KL N+ Q+ Q+
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS

Query:  AHVA-----FTLDDAGKLVTIPVEEFAKFQQYQE
         +VA      +LD + K+VT+  +EFAK+ QYQE
Subjt:  AHVA-----FTLDDAGKLVTIPVEEFAKFQQYQE

A0A438H537 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-2130.57Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+TE+PP D ++K W++ DARL LQ+KNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSCHLSLTMLWLD-------------------------
        + +  D +V+ AQREQ+AV+SFL G+   F+ AK Q+LS S I + +    E F+  LR+ N+S      +L                            
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSCHLSLTMLWLD-------------------------

Query:  ----VVQMYTKPSHTKRECRKLLNKVQKTQSAHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE
            V   Y +  HTK+ CRKL N+ ++ Q+A+VA +      D + K+VT+  EEF+K+ QYQ+
Subjt:  ----VVQMYTKPSHTKRECRKLLNKVQKTQSAHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE

A0A438JIH0 Retrovirus-related Pol polyprotein from transposon RE11.5e-2333.33Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+TE+PP D ++K W++ DARL LQ+KNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS
        + +  D +V+ AQREQ+AV+SFL G+   F+ AK Q+LS S I ++R+ ++E++ LR  +L   LS  M  L       K    K +  KL N+ ++ Q+
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQS

Query:  AHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE
        A+VA +      D + K+VT+  EEF+K+ QYQ+
Subjt:  AHVAFT-----LDDAGKLVTIPVEEFAKFQQYQE

A5BSK6 Integrase catalytic domain-containing protein1.4e-2132.34Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGIVN-----------------------------------------------------EEFNAL
        DDH+T + P +E++K W+R DARL LQI+NS++ +I+G++N                                                     EE N L
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGIVN-----------------------------------------------------EEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKT
        L + TD KV+  QRE++ V+SFL+G+   F+ AK Q+LSSS+I + +    E F   LR+   S            +Q    P HTK+ C+KL N  ++ 
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSCHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKT

Query:  QSAHVAFTLDDAG----KLVTIPVEEFAKFQQYQE
        Q A+VA     +     K V +  +EFAKF QYQE
Subjt:  QSAHVAFTLDDAG----KLVTIPVEEFAKFQQYQE

A5C970 Uncharacterized protein6.4e-2232.13Show/hide
Query:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL
        DDH+TE+PP D  +K W++ DARL LQ+KNS+  DI+G+                                                     V EE NAL
Subjt:  DDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGI-----------------------------------------------------VNEEFNAL

Query:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSC--HLSLTMLWLDVVQMYT-----------KPSHTK
        + +  D +V+ AQREQ+AV+SFL G+   F+ AK Q+LS S I + +    E F+  LR+ N+S   H ++ +L  + +Q              +  HTK
Subjt:  LSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFT--LRSHNLSC--HLSLTMLWLDVVQMYT-----------KPSHTK

Query:  RECRKLLNKVQKTQSAHV-----AFTLDDAGKLVTIPVEEFAKFQQYQE
        + C KL N+ ++ Q+A+V     A   D + K+VT+  EEF K+ QYQ+
Subjt:  RECRKLLNKVQKTQSAHV-----AFTLDDAGKLVTIPVEEFAKFQQYQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATCACATAACTGAAGATCCTCCCAAGGATGAGAGCCAGAAAGCTTGGTTGCGGGGTGATGCTCGACTGATTCTACAGATCAAGAATTCGATGGAGCGTGACAT
TATTGGCATAGTCAACGAGGAGTTTAATGCATTACTCTCATATGGTACTGATGCAAAAGTTCGACTTGCCCAACGCGAACAACTAGCAGTTATAAGTTTTCTTCTTGGTA
TTTCACCTAGATTTGATGTAGCCAAAGACCAATTACTATCTAGTTCGAAAATTCCAGCTTATAGGAGGCACACACTCGAGTACTTCACGTTGAGAAGTCACAACCTATCC
TGTCATCTCAGTCTAACAATGCTTTGGTTGGACGTAGTACAAATGTATACTAAGCCTAGTCATACAAAGCGAGAATGTAGAAAGCTGTTGAATAAAGTTCAGAAAACACA
GTCTGCACATGTTGCATTTACTCTTGATGATGCTGGCAAGTTAGTCACGATTCCTGTGGAAGAATTTGCTAAGTTTCAACAGTATCAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATCACATAACTGAAGATCCTCCCAAGGATGAGAGCCAGAAAGCTTGGTTGCGGGGTGATGCTCGACTGATTCTACAGATCAAGAATTCGATGGAGCGTGACAT
TATTGGCATAGTCAACGAGGAGTTTAATGCATTACTCTCATATGGTACTGATGCAAAAGTTCGACTTGCCCAACGCGAACAACTAGCAGTTATAAGTTTTCTTCTTGGTA
TTTCACCTAGATTTGATGTAGCCAAAGACCAATTACTATCTAGTTCGAAAATTCCAGCTTATAGGAGGCACACACTCGAGTACTTCACGTTGAGAAGTCACAACCTATCC
TGTCATCTCAGTCTAACAATGCTTTGGTTGGACGTAGTACAAATGTATACTAAGCCTAGTCATACAAAGCGAGAATGTAGAAAGCTGTTGAATAAAGTTCAGAAAACACA
GTCTGCACATGTTGCATTTACTCTTGATGATGCTGGCAAGTTAGTCACGATTCCTGTGGAAGAATTTGCTAAGTTTCAACAGTATCAAGAGTAA
Protein sequenceShow/hide protein sequence
MDDHITEDPPKDESQKAWLRGDARLILQIKNSMERDIIGIVNEEFNALLSYGTDAKVRLAQREQLAVISFLLGISPRFDVAKDQLLSSSKIPAYRRHTLEYFTLRSHNLS
CHLSLTMLWLDVVQMYTKPSHTKRECRKLLNKVQKTQSAHVAFTLDDAGKLVTIPVEEFAKFQQYQE