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Moc11g28040 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g28040
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Genome locationchr11:20470979..20471798
RNA-Seq ExpressionMoc11g28040
SyntenyMoc11g28040
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017239618.1 PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus]2.5e-0843.56Show/hide
Query:  SNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTET
        SN GA+   +      +      Q A  SNSLE+++K Y+ KNE +     AL+QSQAASLRNLE  +GQ+  ELR RPH  L SDTE  K +  E  + 
Subjt:  SNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTET

Query:  V
        +
Subjt:  V

XP_022157438.1 uncharacterized protein LOC111024136 [Momordica charantia]1.3e-0930.69Show/hide
Query:  WLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNM---SNAGASIARAG---------DFLEFEQHH-----------------------PA----
        W +P++  G++S+ + + +  T +N+KI NL D++M+++   S AGAS+              F E + H+                       PA    
Subjt:  WLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNM---SNAGASIARAG---------DFLEFEQHH-----------------------PA----

Query:  KQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV-MSCNTLLPP
        +Q+  S  SLE L+K YMA N+ T++        Q + LRNLE+ +GQ+  +L  RP  AL SDTE  K + KEQ + + +     LPP
Subjt:  KQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV-MSCNTLLPP

XP_022158598.1 uncharacterized protein LOC111025053 [Momordica charantia]1.0e-0932.84Show/hide
Query:  STSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMS-------------------NAG---ASIARAGDFLEFEQHHPA----------KQA
        S   W + R+  G++S+ + + +  T +N+KI  L D+  +N S                   N G     I+ A  F +   + P            Q+
Subjt:  STSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMS-------------------NAG---ASIARAGDFLEFEQHHPA----------KQA

Query:  ASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTE--TVMSCNTLLPPYPT--LLEKESAQ
          S  SLE+++K YMA N+       A +QSQAASLRNLE+ +GQ+  +L+ RP  AL SDTE  K + KEQ    T+ S   L P +P    L KE AQ
Subjt:  ASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTE--TVMSCNTLLPPYPT--LLEKESAQ

Query:  V
        +
Subjt:  V

XP_023522102.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo]8.4e-0936.17Show/hide
Query:  EWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMSNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAAS
        +W + RS  G  +RG+ + D L+ IN +++++ +++         ++A   D +     H A     ++    SLIK YMAKN+       A IQSQ AS
Subjt:  EWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMSNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAAS

Query:  LRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV
        LRNLEV +GQ+  ELR RP   L +DTE  K E  EQ + +
Subjt:  LRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV

XP_024023163.1 uncharacterized protein LOC112092116 [Morus notabilis]1.1e-0842.99Show/hide
Query:  HPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETVMSCNTLL--------PPY
        HP  Q A   +S+E L+K YMAKN+  IQNQ+ALIQ+QAASLRNLE  +GQ+   L   P  AL S+T+  + EE     T     +L         PP+
Subjt:  HPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETVMSCNTLL--------PPY

Query:  PTLLEKE
        P   +K+
Subjt:  PTLLEKE

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like1.1e-0640.94Show/hide
Query:  SNAGASIA------RAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEE
        SN GA  +      R      F Q       A +SNSLESL+K YMAKN+       ALIQSQAA+L+NLE  +GQ+  ELR R   AL SDTE  +   
Subjt:  SNAGASIA------RAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEE

Query:  KEQTETV-MSCNTLLPPYPTLLEKESA
        KE  + + +    ++ P    +EKE A
Subjt:  KEQTETV-MSCNTLLPPYPTLLEKESA

A0A6J1DAE9 uncharacterized protein LOC1110185143.8e-0742.86Show/hide
Query:  QHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV
        Q  P++ A +++ SLE++ K YMA+N+  +Q+Q A IQ+QAA +RNLEV MGQ   +L+ RP  +    TE  K +  EQ + V
Subjt:  QHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV

A0A6J1DTD1 uncharacterized protein LOC1110241366.3e-1030.69Show/hide
Query:  WLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNM---SNAGASIARAG---------DFLEFEQHH-----------------------PA----
        W +P++  G++S+ + + +  T +N+KI NL D++M+++   S AGAS+              F E + H+                       PA    
Subjt:  WLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNM---SNAGASIARAG---------DFLEFEQHH-----------------------PA----

Query:  KQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV-MSCNTLLPP
        +Q+  S  SLE L+K YMA N+ T++        Q + LRNLE+ +GQ+  +L  RP  AL SDTE  K + KEQ + + +     LPP
Subjt:  KQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV-MSCNTLLPP

A0A6J1DWK1 uncharacterized protein LOC1110250534.8e-1032.84Show/hide
Query:  STSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMS-------------------NAG---ASIARAGDFLEFEQHHPA----------KQA
        S   W + R+  G++S+ + + +  T +N+KI  L D+  +N S                   N G     I+ A  F +   + P            Q+
Subjt:  STSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMS-------------------NAG---ASIARAGDFLEFEQHHPA----------KQA

Query:  ASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTE--TVMSCNTLLPPYPT--LLEKESAQ
          S  SLE+++K YMA N+       A +QSQAASLRNLE+ +GQ+  +L+ RP  AL SDTE  K + KEQ    T+ S   L P +P    L KE AQ
Subjt:  ASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTE--TVMSCNTLLPPYPT--LLEKESAQ

Query:  V
        +
Subjt:  V

A0A6J1GJ68 uncharacterized protein LOC1114543445.0e-0753.33Show/hide
Query:  SSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV
        +S  S+ESLIK YMAKN+        +IQSQ ASL+NLEV +GQ+  ELR RP   L +DTET K E KEQ + +
Subjt:  SSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACCAACTTTCTACTAGTGAATGGTTGAATCCAAGATCAGCTATGGGTGAGAATTCAAGAGGAATTTATGATGATGACATGCTAACTTTGATCAACACGAAAAT
CTCAAATCTGGCGGACATGATGATGAAGAATATGTCTAATGCTGGAGCATCTATTGCCAGAGCAGGAGATTTTTTGGAGTTTGAGCAACATCATCCTGCCAAGCAAGCTG
CAAGTTCATCAAATTCTTTGGAAAGCCTGATTAAAGCTTACATGGCCAAGAATGAGGATACCATTCAAAATCAAGCTGCATTAATTCAGAGCCAAGCAGCGTCATTAAGG
AATTTGGAAGTTCATATGGGGCAAGTTGTAGAAGAACTAAGAAAGCGACCGCATGAAGCTCTCTCGAGCGATACTGAGACACTCAAATTGGAGGAGAAAGAACAAACTGA
AACAGTAATGAGTTGCAACACATTGCTTCCACCATATCCCACCCTTCTAGAGAAAGAAAGTGCTCAAGTCAATGCAGAAATTAAAATTGTGAGTCAAATTAAAGAAACTA
CAAATGAGCTGCAACATAAGAATATTCATAAGAGCATTGCTAGAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACCAACTTTCTACTAGTGAATGGTTGAATCCAAGATCAGCTATGGGTGAGAATTCAAGAGGAATTTATGATGATGACATGCTAACTTTGATCAACACGAAAAT
CTCAAATCTGGCGGACATGATGATGAAGAATATGTCTAATGCTGGAGCATCTATTGCCAGAGCAGGAGATTTTTTGGAGTTTGAGCAACATCATCCTGCCAAGCAAGCTG
CAAGTTCATCAAATTCTTTGGAAAGCCTGATTAAAGCTTACATGGCCAAGAATGAGGATACCATTCAAAATCAAGCTGCATTAATTCAGAGCCAAGCAGCGTCATTAAGG
AATTTGGAAGTTCATATGGGGCAAGTTGTAGAAGAACTAAGAAAGCGACCGCATGAAGCTCTCTCGAGCGATACTGAGACACTCAAATTGGAGGAGAAAGAACAAACTGA
AACAGTAATGAGTTGCAACACATTGCTTCCACCATATCCCACCCTTCTAGAGAAAGAAAGTGCTCAAGTCAATGCAGAAATTAAAATTGTGAGTCAAATTAAAGAAACTA
CAAATGAGCTGCAACATAAGAATATTCATAAGAGCATTGCTAGAGCATAG
Protein sequenceShow/hide protein sequence
MEDQLSTSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMSNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLR
NLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETVMSCNTLLPPYPTLLEKESAQVNAEIKIVSQIKETTNELQHKNIHKSIARA