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Moc11g28080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g28080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:20484552..20486041
RNA-Seq ExpressionMoc11g28080
SyntenyMoc11g28080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157708.1 uncharacterized protein LOC111024361 [Momordica charantia]7.9e-4561.96Show/hide
Query:  DSAATLSCSTMALQ--TCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLS
        D A  L    ++LQ       FLT FFPPAKT QLRTEI SFR+YDYEQLFE WE                               RTILD AAGG LLS
Subjt:  DSAATLSCSTMALQ--TCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLS

Query:  KTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        +T ENAYILL++MA NSFQWP ERSNAK+VA +YEIDE+SSLKAQVQALT  VSKLS P TSHSNELVAA DTYSYY EPTIEQ
Subjt:  KTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

XP_023881727.1 uncharacterized protein LOC111994101 [Quercus suber]2.8e-2650.35Show/hide
Query:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWERTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSS
        S  + Q  A   L KFFP AKTAQLR+EI  FRQ D+E L+++WERTI+D A+GG L+SKT E A  LLE MA+N++QWP ER+ AK+VA I+E++  ++
Subjt:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWERTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSS

Query:  LKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        L AQV +L+  VS L+  R   S E VAA+       E + EQ
Subjt:  LKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

XP_023903214.1 uncharacterized protein LOC112015077 [Quercus suber]1.0e-2343.68Show/hide
Query:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILL
        S  + Q  A  FL KFFPPAKTAQLR+EI  FRQ D+E L+E+WE                               RTI+D A+GG L+SKT E A  LL
Subjt:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILL

Query:  ENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        E MA+N++QWP ER+ AK+VA I+E++  ++L AQV +L+  VS LS  R   S E VAA+       E + EQ
Subjt:  ENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

XP_023903608.1 uncharacterized protein LOC112015434 [Quercus suber]2.2e-2342.53Show/hide
Query:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILL
        S  +LQ  A  FLT+FFPPAKTAQLR+EI  FRQ D+E L+E+WE                               RTI+D A+G  L+SKT E A  LL
Subjt:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILL

Query:  ENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        E MA+N++QWP +R+ AK+VARI++++  ++L AQV +L+  VS L+  R   S E VAA+       E + EQ
Subjt:  ENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

XP_024030361.1 uncharacterized protein LOC112094221 [Morus notabilis]1.7e-2342.17Show/hide
Query:  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILLENMAANSF
        A  FLTKFFPP+KTA LR+EIV FRQ D+E L+E+WE                               RTI+D A+GG++LSKT E A +LLE MA+N+ 
Subjt:  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILLENMAANSF

Query:  QWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        QWP ERS+ KR   ++EID + +  AQ+ ALT  +S+L+    + S E    A T    E    EQ
Subjt:  QWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

TrEMBL top hitse value%identityAlignment
A0A2I4FP56 uncharacterized protein LOC1090008371.6e-1938.65Show/hide
Query:  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER----------------------------TILDVAAGGILLSKTLENAYILLENMAANSFQWP
        A  FL KFFPPAKTAQL++EI   +Q D+E L+++WER                            T +D  +GGIL+SKT E    LLE MA++++QWP
Subjt:  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER----------------------------TILDVAAGGILLSKTLENAYILLENMAANSFQWP

Query:  HERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
         +R+ AK+VA I+E++ ++++ AQV  L+  +S L   R   S E VAA        E + EQ
Subjt:  HERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

A0A2I4G4Q3 uncharacterized protein LOC1090047123.9e-2139.66Show/hide
Query:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILL
        S  + Q  A  F  KFFPPAKT QLR+EI  F+Q D+E L+E+WE                               RTI+D  +GG L+ KT+E A  LL
Subjt:  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLSKTLENAYILL

Query:  ENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        E MA+N++QWP ER+ AK+VARI+E++ +++L AQV  L+  +S L+  R   S E V A        E + EQ
Subjt:  ENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

A0A6J0ZYV0 uncharacterized protein LOC1104134138.1e-1938.65Show/hide
Query:  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER-------------------------------TILDVAAGGILLSKTLENAYILLENMAANSF
        A  FL KFFPPAKTA++R +I SF Q+D E L+E+WER                               TI+D AAGG L+SK   +AY LLE MA+N++
Subjt:  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER-------------------------------TILDVAAGGILLSKTLENAYILLENMAANSF

Query:  QWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELV-AAADTYSYYEEP
        QWP ERS +++    YEID + +L  QV AL+  +  L      +S  +     D++SY + P
Subjt:  QWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELV-AAADTYSYYEEP

A0A6J1DU19 uncharacterized protein LOC1110243613.8e-4561.96Show/hide
Query:  DSAATLSCSTMALQ--TCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLS
        D A  L    ++LQ       FLT FFPPAKT QLRTEI SFR+YDYEQLFE WE                               RTILD AAGG LLS
Subjt:  DSAATLSCSTMALQ--TCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE-------------------------------RTILDVAAGGILLS

Query:  KTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
        +T ENAYILL++MA NSFQWP ERSNAK+VA +YEIDE+SSLKAQVQALT  VSKLS P TSHSNELVAA DTYSYY EPTIEQ
Subjt:  KTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

A0A6P9E7J9 uncharacterized protein LOC1183442382.1e-1939.88Show/hide
Query:  FLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER-------------------------------TILDVAAGGILLSKTLENAYILLENMAANSFQWP
        FL KFFPPAKTAQLR+EI  F+Q D+E L+E+ ER                               TI+DVA GG L+SKT+E A  LLE MA+N+ QWP
Subjt:  FLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER-------------------------------TILDVAAGGILLSKTLENAYILLENMAANSFQWP

Query:  HERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ
         ER+  K++  I+E++ +++L AQ   L+  +S L+  R   S E V A        E + EQ
Subjt:  HERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTGCAGATGAAGTTGGAGCCTTCTTCCGTGATGACAGCGCCGCAACGCTGTCTTGTAGCACCATGGCGCTACAAACTTGCGCGTCCACGTTTCTCACAAAATT
TTTCCCACCTGCCAAGACAGCTCAGCTTAGAACAGAGATTGTATCATTCAGGCAATACGATTATGAGCAACTATTTGAGTCCTGGGAGAGAACTATACTGGATGTTGCAG
CTGGAGGCATATTACTATCCAAAACACTAGAGAATGCTTACATCTTACTGGAGAATATGGCGGCCAATAGCTTTCAATGGCCCCATGAGAGATCGAATGCCAAAAGAGTT
GCTAGAATCTATGAAATCGACGAGGTAAGTTCCCTAAAAGCTCAAGTTCAAGCTCTGACTACTGTTGTGTCTAAACTTTCAAGACCAAGAACTTCGCATTCAAATGAGTT
GGTGGCAGCAGCAGATACATATTCTTACTATGAGGAGCCAACCATCGAGCAAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTGCAGATGAAGTTGGAGCCTTCTTCCGTGATGACAGCGCCGCAACGCTGTCTTGTAGCACCATGGCGCTACAAACTTGCGCGTCCACGTTTCTCACAAAATT
TTTCCCACCTGCCAAGACAGCTCAGCTTAGAACAGAGATTGTATCATTCAGGCAATACGATTATGAGCAACTATTTGAGTCCTGGGAGAGAACTATACTGGATGTTGCAG
CTGGAGGCATATTACTATCCAAAACACTAGAGAATGCTTACATCTTACTGGAGAATATGGCGGCCAATAGCTTTCAATGGCCCCATGAGAGATCGAATGCCAAAAGAGTT
GCTAGAATCTATGAAATCGACGAGGTAAGTTCCCTAAAAGCTCAAGTTCAAGCTCTGACTACTGTTGTGTCTAAACTTTCAAGACCAAGAACTTCGCATTCAAATGAGTT
GGTGGCAGCAGCAGATACATATTCTTACTATGAGGAGCCAACCATCGAGCAAACTTAG
Protein sequenceShow/hide protein sequence
MAPADEVGAFFRDDSAATLSCSTMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWERTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRV
ARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQT