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Moc11g28200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g28200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:20578398..20582314
RNA-Seq ExpressionMoc11g28200
SyntenyMoc11g28200
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]2.1e-3659.85Show/hide
Query:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS
        AG+  E    LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ RVLSFA RLQL+RSVL+S QVYWASVFVLPA V +EV+++LRS
Subjt:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS

Query:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        +LW+G E G  G KVAW +V LP  EGG G+R
Subjt:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]2.1e-3659.85Show/hide
Query:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS
        AG+  E    LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ RVLSFA RLQL+RSVL+S QVYWASVFVLPA V +EV+++LRS
Subjt:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS

Query:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        +LW+G E G  G KVAW +V LP  EGG G+R
Subjt:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]3.6e-3660.31Show/hide
Query:  GLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSF
        G+   +   LA+ +GFS+  LPVRYLG+PLL  RL   DC PL+++I++RIRSWS RVLSFA RLQL+RSVL+S QVYWASVF+LP  V  +V+++LRS+
Subjt:  GLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSF

Query:  LWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        LW+G E G  GAKVAW EV LP  EGGL +R
Subjt:  LWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]2.5e-3761.07Show/hide
Query:  GLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSF
        G+   +   LA+ +GFS+  LPVRYLG+PLLSRRL   DC PL+++I++RIRSWS RVLSFA RLQL+RSVL+S QVYWASVF+LP  V  +V+++LR++
Subjt:  GLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSF

Query:  LWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        LW+G E G  GAKVAW EV LP  EGGL +R
Subjt:  LWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

XP_031740424.1 uncharacterized protein LOC116403425 [Cucumis sativus]2.7e-3665.25Show/hide
Query:  LGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSFLWKGCEGGSFGAK
        +GFS+  LPVRYLG+PLLSRRL   DC PL+++I++RIRSWS RVLSFA RLQL+RSVL+S QVYWASVF+LP  V  +V+++LR++LW+G E G  GAK
Subjt:  LGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSFLWKGCEGGSFGAK

Query:  VAWSEVFLPLREGGLGVR
        VAW EV LP  EGGL +R
Subjt:  VAWSEVFLPLREGGLGVR

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein1.0e-3659.85Show/hide
Query:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS
        AG+  E    LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ RVLSFA RLQL+RSVL+S QVYWASVFVLPA V +EV+++LRS
Subjt:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS

Query:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        +LW+G E G  G KVAW +V LP  EGG G+R
Subjt:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

A0A5A7TWG5 Reverse transcriptase domain-containing protein9.5e-3558.33Show/hide
Query:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS
        AG+  E    LA+ +GF    L VRYLG+PLL+ RL   DC PL+++I+++IRSW+ RVLSFA R+QL+ SVL+S QVYWASVFVLPA V +EV+++LRS
Subjt:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS

Query:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        +LW+G E G  G KVAW +V LP  EGGLG+R
Subjt:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

A0A5A7V3Z0 Reverse transcriptase domain-containing protein3.3e-3559.85Show/hide
Query:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS
        AG+  E    LA+ +GF    L VRYLG+PLL+ RL   D  PL+++I++RIRSW+ RVLSFA RLQL+ SVL+SFQVYWASVFVLPA V +EV+++LRS
Subjt:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS

Query:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        +LW+G E G  G KVAW +V LP  EGGLG+R
Subjt:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

A0A5D3DXE4 Reverse transcriptase domain-containing protein1.0e-3659.85Show/hide
Query:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS
        AG+  E    LA+ +GF+   LPVRYLG+PLL+ RL   DC PL+++I+++IRSW+ RVLSFA RLQL+RSVL+S QVYWASVFVLPA V +EV+++LRS
Subjt:  AGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRS

Query:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR
        +LW+G E G  G KVAW +V LP  EGG G+R
Subjt:  FLWKGCEGGSFGAKVAWSEVFLPLREGGLGVR

A0A6J1DTG0 uncharacterized protein LOC1110241652.9e-3667.23Show/hide
Query:  GLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSF
        GLP+ E   LA+FLGFSV +L VRYLG+ LLSRR+S  DCKPLLE+I  R+R+WS R+LSFA  L LIR V QSFQVYWASVF+LPA V+H+VE++L SF
Subjt:  GLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSF

Query:  LWKGCEGGSFGAKVAWSEV
        LWKG E G  G KVAWSE+
Subjt:  LWKGCEGGSFGAKVAWSEV

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.5e-1337.5Show/hide
Query:  IPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSFLWKGCEGGSFGAKVAWSEVFLPLREGG
        +P+L +R++      +LE++S+R+  W  + LSFA RL L ++VL S  V+  S  +LP  +++ +++L R+FLW           V WS+V  P +EGG
Subjt:  IPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSFLWKGCEGGSFGAKVAWSEVFLPLREGG

Query:  LGVR
        LGVR
Subjt:  LGVR

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-2750.86Show/hide
Query:  FSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSFLWKGCEGGSFGAKVA
        F+   LPVRYLG+PLL+++++  D  PL+EKI  RI  W+ R LSFA RLQLI SV+ S   +W S F LP+  + E++ +  SFLW G E  +  AKVA
Subjt:  FSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVVHEVERLLRSFLWKGCEGGSFGAKVA

Query:  WSEVFLPLREGGLGVR
        WS+V  P  EGGLG+R
Subjt:  WSEVFLPLREGGLGVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCACTAGCTGGAGCCGGGTCTCAGGCCGACTTCAATTCAGTTCTCAATACCGTCGCGGTTCAAATCTCTGATCCAGACGACCTTCAGACGGATGCTGAT
TCCTCCGCCTCTGTCAATAACGATGTTGAAGACGAAGAAGACGACTTCGATCCCTTTGAAGGCAACCCTGGTCGAATATATAAGGTGTTCCTTGGGCAGTTTAGA
AATCTTCTCCGACTTTTAGAGCCTTGTCAAGGTTTCTTTCCATATACTGAAGTATTTATCACGCATGTTGATGCAACATTCTACCGAGCTGCCGTGGTCGGCCAC
GTGGTAACCGGTCAAGCTGACGAGGTGCGAGCTCATGTAAGGGCCGGTCTTCCTCTTGAGGAGGTGCAGGGGTTGGCTTCTTTCTTGGGGTTTTCGGTGGCAACT
CTCCCGGTGCGGTATCTTGGCATTCCGCTCCTTTCTCGTCGGTTGTCTTTTCGAGATTGTAAGCCTTTGTTGGAGAAGATTAGTGCTCGTATTCGGAGTTGGTCG
GTTCGTGTGCTTTCTTTTGCTGATCGTTTGCAACTCATTCGCTCGGTGCTTCAGAGTTTCCAGGTTTACTGGGCCAGTGTCTTTGTTCTTCCAGCCCCAGTGGTT
CATGAGGTGGAGCGTCTTCTTCGCTCGTTTTTATGGAAGGGCTGTGAGGGTGGGTCCTTTGGGGCGAAGGTGGCTTGGTCTGAGGTCTTTCTTCCTCTTAGGGAG
GGGGGGCTGGGTGTTCGCTACTCGGCCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCACTAGCTGGAGCCGGGTCTCAGGCCGACTTCAATTCAGTTCTCAATACCGTCGCGGTTCAAATCTCTGATCCAGACGACCTTCAGACGGATGCTGAT
TCCTCCGCCTCTGTCAATAACGATGTTGAAGACGAAGAAGACGACTTCGATCCCTTTGAAGGCAACCCTGGTCGAATATATAAGGTGTTCCTTGGGCAGTTTAGA
AATCTTCTCCGACTTTTAGAGCCTTGTCAAGGTTTCTTTCCATATACTGAAGTATTTATCACGCATGTTGATGCAACATTCTACCGAGCTGCCGTGGTCGGCCAC
GTGGTAACCGGTCAAGCTGACGAGGTGCGAGCTCATGTAAGGGCCGGTCTTCCTCTTGAGGAGGTGCAGGGGTTGGCTTCTTTCTTGGGGTTTTCGGTGGCAACT
CTCCCGGTGCGGTATCTTGGCATTCCGCTCCTTTCTCGTCGGTTGTCTTTTCGAGATTGTAAGCCTTTGTTGGAGAAGATTAGTGCTCGTATTCGGAGTTGGTCG
GTTCGTGTGCTTTCTTTTGCTGATCGTTTGCAACTCATTCGCTCGGTGCTTCAGAGTTTCCAGGTTTACTGGGCCAGTGTCTTTGTTCTTCCAGCCCCAGTGGTT
CATGAGGTGGAGCGTCTTCTTCGCTCGTTTTTATGGAAGGGCTGTGAGGGTGGGTCCTTTGGGGCGAAGGTGGCTTGGTCTGAGGTCTTTCTTCCTCTTAGGGAG
GGGGGGCTGGGTGTTCGCTACTCGGCCTTGTAG
Protein sequenceShow/hide protein sequence
MSSLAGAGSQADFNSVLNTVAVQISDPDDLQTDADSSASVNNDVEDEEDDFDPFEGNPGRIYKVFLGQFRNLLRLLEPCQGFFPYTEVFITHVDATFYRAAVVGH
VVTGQADEVRAHVRAGLPLEEVQGLASFLGFSVATLPVRYLGIPLLSRRLSFRDCKPLLEKISARIRSWSVRVLSFADRLQLIRSVLQSFQVYWASVFVLPAPVV
HEVERLLRSFLWKGCEGGSFGAKVAWSEVFLPLREGGLGVRYSAL