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Moc11g28780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g28780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr11:20956420..20962512
RNA-Seq ExpressionMoc11g28780
SyntenyMoc11g28780
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150038.1 uncharacterized protein K02A2.6-like [Momordica charantia]9.1e-2446.58Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--
        GG + +YALRFNFR SNNEAEYEALL GL++A+ LG  H+ ++SDSQLIVN+I +EYQAKDP+MEKYL KV++ LA+  + +  Q   +  S  +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--

Query:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK
                          T  + E     V+   PTWMD IVE +K
Subjt:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK

XP_022152157.1 uncharacterized protein LOC111019946 [Momordica charantia]4.1e-2447.95Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--
        GG + KYALRFNFR SNNEAEYEALL GL +A+ LG  H+ ++SDSQLIVN+I +EYQAKDP+MEKYLSKV++ LA+  + +  Q   +  S  +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--

Query:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK
                          T  + E     V    PTWMD IVE +K
Subjt:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]5.9e-2347.95Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT
        GG + +YAL+FNFR SNNEAEYEALL GL++A+ LG  H+ ++SDSQLIVN+I +EYQ KDP+MEKYLSKV+  LA   + +  Q   +  S  +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT

Query:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK
            EI   RS  VE                   PTWMD IVE +K
Subjt:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK

XP_022155184.1 uncharacterized protein LOC111022318 [Momordica charantia]4.1e-2447.95Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT
        GGM+L+YALRFNFR SNNEAEYEALL GL++A+ LGV H+ ++SDSQL+VN+I +EYQ KDP+MEKYLSKV++ L +  + + +Q   +     +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT

Query:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK
            EI   RS  VE                   P+WMD IVE +K
Subjt:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK

XP_022158589.1 uncharacterized protein LOC111025045 [Momordica charantia]1.7e-2244.52Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIE-----
        GG + +YALRFNFR SNNEAEYEALL GL++A+ LG  H+ +++DSQL+VN+I +EYQ KDP+MEKYLSKV++ LA+  + + +Q   +  S        
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIE-----

Query:  AHAFTRFLCEIRS--------------FYVEAHQPTWMDLIVESLK
        A A+  +L    S                V+   P+WMD IVE +K
Subjt:  AHAFTRFLCEIRS--------------FYVEAHQPTWMDLIVESLK

TrEMBL top hitse value%identityAlignment
A0A6J1D8D8 Ribonuclease H4.4e-2446.58Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--
        GG + +YALRFNFR SNNEAEYEALL GL++A+ LG  H+ ++SDSQLIVN+I +EYQAKDP+MEKYL KV++ LA+  + +  Q   +  S  +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--

Query:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK
                          T  + E     V+   PTWMD IVE +K
Subjt:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK

A0A6J1DBX4 Ribonuclease H8.3e-2345.89Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIE-----
        GG + +YALRFNFR SNN+A YEALL GL++A+ LG  H+ ++SDSQLIVN+I +EYQAKDP+MEKYLSKV++ LA+  + +  Q   +  S  +     
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIE-----

Query:  AHAF--------------TRFLCEIRSFYVEAHQPTWMDLIVESLK
        A A+              T  + E     V+   PTWMD IVE +K
Subjt:  AHAF--------------TRFLCEIRSFYVEAHQPTWMDLIVESLK

A0A6J1DFF1 uncharacterized protein LOC1110199462.0e-2447.95Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--
        GG + KYALRFNFR SNNEAEYEALL GL +A+ LG  H+ ++SDSQLIVN+I +EYQAKDP+MEKYLSKV++ LA+  + +  Q   +  S  +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHA--

Query:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK
                          T  + E     V    PTWMD IVE +K
Subjt:  -----------------FTRFLCEIRSFYVEAHQPTWMDLIVESLK

A0A6J1DNM4 Ribonuclease H2.9e-2347.95Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT
        GG + +YAL+FNFR SNNEAEYEALL GL++A+ LG  H+ ++SDSQLIVN+I +EYQ KDP+MEKYLSKV+  LA   + +  Q   +  S  +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT

Query:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK
            EI   RS  VE                   PTWMD IVE +K
Subjt:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK

A0A6J1DPI3 Ribonuclease H2.0e-2447.95Show/hide
Query:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT
        GGM+L+YALRFNFR SNNEAEYEALL GL++A+ LGV H+ ++SDSQL+VN+I +EYQ KDP+MEKYLSKV++ L +  + + +Q   +     +A A  
Subjt:  GGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNKITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFT

Query:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK
            EI   RS  VE                   P+WMD IVE +K
Subjt:  RFLCEI---RSFYVE----------------AHQPTWMDLIVESLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAAAAACACCCGGGACAGCACCTCGGCGCCTAAGGGCAGCGCCACGGCGCTAAGGCACGGCGCCATGGTGCTGCACAGTGCCGCGGCACTACAATGCAGTGCCGT
GGCACTGTTCGCTGTCCCCGCAGCACCATGGCGCTACTGCATGGCGCCATGGTGCTGTCTGCGTGGTGGGATGAAACTTAAGTACGCACTACGCTTCAATTTTCGAGCTT
CCAATAATGAGGCAGAGTATGAAGCACTCCTTACCGGCCTGCAGATGGCGAGGAGCCTGGGAGTTTGCCATCTACTTATTTATAGTGATTCGCAGCTCATTGTGAACAAA
ATCACTAAGGAGTATCAAGCAAAAGATCCCAAAATGGAGAAATATTTGAGCAAAGTCAAGACGCTGCTTGCCGAGCTAACAAGTATTCAAGAACACCAATGCAGATGCAC
TAGCAAAAGCAAGATCGAAGCACATGCATTCACGCGCTTTCTCTGCGAGATTCGATCCTTTTACGTTGAAGCTCATCAACCTACTTGGATGGATCTCATAGTGGAATCTC
TAAAAGACAAGACTCGAGGTGGAGTGTTGAGATGCGGAGGAGCAGCTGGAAAAATCTCGTTGGGACGTCACAACGTTGAGGCTGTCCCCAGCGTACGCGCATGCATCAGG
CACTGTAGTGTTGGGACGCTGTCACAAGCGTCTCAACATTGTCCTGTTGTTCCTGAAGGTCTTGGGTTTGAGGCTCCTTCACTGAATCAAACCCAAGACTTTCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCAAAAACACCCGGGACAGCACCTCGGCGCCTAAGGGCAGCGCCACGGCGCTAAGGCACGGCGCCATGGTGCTGCACAGTGCCGCGGCACTACAATGCAGTGCCGT
GGCACTGTTCGCTGTCCCCGCAGCACCATGGCGCTACTGCATGGCGCCATGGTGCTGTCTGCGTGGTGGGATGAAACTTAAGTACGCACTACGCTTCAATTTTCGAGCTT
CCAATAATGAGGCAGAGTATGAAGCACTCCTTACCGGCCTGCAGATGGCGAGGAGCCTGGGAGTTTGCCATCTACTTATTTATAGTGATTCGCAGCTCATTGTGAACAAA
ATCACTAAGGAGTATCAAGCAAAAGATCCCAAAATGGAGAAATATTTGAGCAAAGTCAAGACGCTGCTTGCCGAGCTAACAAGTATTCAAGAACACCAATGCAGATGCAC
TAGCAAAAGCAAGATCGAAGCACATGCATTCACGCGCTTTCTCTGCGAGATTCGATCCTTTTACGTTGAAGCTCATCAACCTACTTGGATGGATCTCATAGTGGAATCTC
TAAAAGACAAGACTCGAGGTGGAGTGTTGAGATGCGGAGGAGCAGCTGGAAAAATCTCGTTGGGACGTCACAACGTTGAGGCTGTCCCCAGCGTACGCGCATGCATCAGG
CACTGTAGTGTTGGGACGCTGTCACAAGCGTCTCAACATTGTCCTGTTGTTCCTGAAGGTCTTGGGTTTGAGGCTCCTTCACTGAATCAAACCCAAGACTTTCGGTGA
Protein sequenceShow/hide protein sequence
MSKNTRDSTSAPKGSATALRHGAMVLHSAAALQCSAVALFAVPAAPWRYCMAPWCCLRGGMKLKYALRFNFRASNNEAEYEALLTGLQMARSLGVCHLLIYSDSQLIVNK
ITKEYQAKDPKMEKYLSKVKTLLAELTSIQEHQCRCTSKSKIEAHAFTRFLCEIRSFYVEAHQPTWMDLIVESLKDKTRGGVLRCGGAAGKISLGRHNVEAVPSVRACIR
HCSVGTLSQASQHCPVVPEGLGFEAPSLNQTQDFR