; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g28800 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g28800
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:20970971..20977766
RNA-Seq ExpressionMoc11g28800
SyntenyMoc11g28800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVX06594.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.4e-0444.12Show/hide
Query:  IDYATYLINRSPTTSQDFKLPEKVLIDKSKLDVKSNKCFFLG----KF-----CTKDITKVDSGKTES
        +  A YLINR P+   +F+LPE+V   KSKLD KS  CFF+G    KF        D+T++D  K++S
Subjt:  IDYATYLINRSPTTSQDFKLPEKVLIDKSKLDVKSNKCFFLG----KF-----CTKDITKVDSGKTES
XP_038890296.1 TMV resistance protein N-like [Benincasa hispida]3.8e-0554.39Show/hide
Query:  AFADFASTLGVKHIKGIVLDTKEEQHELVLDASLLKEMTCLRILEMDNNVKLKAIDY
        AF  FA   GVK+IKG+VLD +E+Q EL L+ SL KEMT L++LE+DN    K ++Y
Subjt:  AFADFASTLGVKHIKGIVLDTKEEQHELVLDASLLKEMTCLRILEMDNNVKLKAIDY
TrEMBL top hitse value%identityAlignment
A0A438JCA5 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-0444.12Show/hide
Query:  IDYATYLINRSPTTSQDFKLPEKVLIDKSKLDVKSNKCFFLG----KF-----CTKDITKVDSGKTES
        +  A YLINR P+   +F+LPE+V   KSKLD KS  CFF+G    KF        D+T++D  K++S
Subjt:  IDYATYLINRSPTTSQDFKLPEKVLIDKSKLDVKSNKCFFLG----KF-----CTKDITKVDSGKTES
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCCACCAGACAGCTCAAAATGACGTCAATCACGACTTCCTACCAAATAGCTCACGTCAGCCTCACTACCTTGGTCTTGGTGGTGAGCTCCCACAAAAT
AGGTTATCAAAGCCCAAAGAAAAAGACCCCATTAGTAGGCTAAGCCCTACCTCAAGGATGAGCTGCCAACTTAAAAAGGTCGAGCTGTTCTCGAAGGATCATAGG
TCGACCTCAGAGGTCCGCCCCAGTTACTTAGACGCGGATGAGAACCTTCCAAGTTTTATGCTCCAAGGCAAGGATAAATCCAGAGACCAACACGGACCAACGGTC
CATAGCAGGTCACCTGACCCTAAAGCAGTGAAATACCTCGATGGGATGGGTAACTACTCCTCAAATCCCTATAAATACACCTCCACTCCACCCACTAAGCCGACC
TCCCAGGTCGTCCTCCGTGCCTTTGCAGATTTTGCATCAACATTGGGAGTAAAACACATTAAAGGCATAGTCTTGGACACGAAAGAGGAGCAACATGAACTAGTG
TTGGATGCTAGCCTTCTTAAAGAAATGACATGTTTAAGAATATTGGAAATGGACAATAATGTGAAGCTTAAGGCAATCGACTATGCGACCTATCTGATCAATAGG
AGCCCCACCACATCACAAGACTTCAAATTGCCTGAAAAAGTCTTGATCGATAAGAGTAAACTGGATGTCAAATCCAATAAGTGTTTCTTTCTTGGGAAGTTTTGT
ACCAAAGACATAACTAAAGTTGATTCAGGAAAGACAGAGTCAGATGGAAGTAAAGGAGAGAAGACTCAGTTCATAAGTCCTCTTGAGGTTGGGACTAAGACAACA
AGGATTGAAGATCAGAATGCAGCTACTCATAAAGAAACAGTTGTGGTATCTGAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCCACCAGACAGCTCAAAATGACGTCAATCACGACTTCCTACCAAATAGCTCACGTCAGCCTCACTACCTTGGTCTTGGTGGTGAGCTCCCACAAAAT
AGGTTATCAAAGCCCAAAGAAAAAGACCCCATTAGTAGGCTAAGCCCTACCTCAAGGATGAGCTGCCAACTTAAAAAGGTCGAGCTGTTCTCGAAGGATCATAGG
TCGACCTCAGAGGTCCGCCCCAGTTACTTAGACGCGGATGAGAACCTTCCAAGTTTTATGCTCCAAGGCAAGGATAAATCCAGAGACCAACACGGACCAACGGTC
CATAGCAGGTCACCTGACCCTAAAGCAGTGAAATACCTCGATGGGATGGGTAACTACTCCTCAAATCCCTATAAATACACCTCCACTCCACCCACTAAGCCGACC
TCCCAGGTCGTCCTCCGTGCCTTTGCAGATTTTGCATCAACATTGGGAGTAAAACACATTAAAGGCATAGTCTTGGACACGAAAGAGGAGCAACATGAACTAGTG
TTGGATGCTAGCCTTCTTAAAGAAATGACATGTTTAAGAATATTGGAAATGGACAATAATGTGAAGCTTAAGGCAATCGACTATGCGACCTATCTGATCAATAGG
AGCCCCACCACATCACAAGACTTCAAATTGCCTGAAAAAGTCTTGATCGATAAGAGTAAACTGGATGTCAAATCCAATAAGTGTTTCTTTCTTGGGAAGTTTTGT
ACCAAAGACATAACTAAAGTTGATTCAGGAAAGACAGAGTCAGATGGAAGTAAAGGAGAGAAGACTCAGTTCATAAGTCCTCTTGAGGTTGGGACTAAGACAACA
AGGATTGAAGATCAGAATGCAGCTACTCATAAAGAAACAGTTGTGGTATCTGAGGAATAG
Protein sequenceShow/hide protein sequence
MSSHQTAQNDVNHDFLPNSSRQPHYLGLGGELPQNRLSKPKEKDPISRLSPTSRMSCQLKKVELFSKDHRSTSEVRPSYLDADENLPSFMLQGKDKSRDQHGPTV
HSRSPDPKAVKYLDGMGNYSSNPYKYTSTPPTKPTSQVVLRAFADFASTLGVKHIKGIVLDTKEEQHELVLDASLLKEMTCLRILEMDNNVKLKAIDYATYLINR
SPTTSQDFKLPEKVLIDKSKLDVKSNKCFFLGKFCTKDITKVDSGKTESDGSKGEKTQFISPLEVGTKTTRIEDQNAATHKETVVVSEE