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Moc11g29110 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g29110
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:21216995..21218584
RNA-Seq ExpressionMoc11g29110
SyntenyMoc11g29110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006487889.1 uncharacterized protein LOC102617714 [Citrus sinensis]1.9e-2535.65Show/hide
Query:  SPTIELLLSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHAL----PSSISYLL--DDSLIFLNTTKVECALL
        +P+  +L++    G PK +I+P      R +     + P LFL L  E     L++ ++    Q  H L      SIS+LL  DDSL+F   T+ +C+ L
Subjt:  SPTIELLLSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHAL----PSSISYLL--DDSLIFLNTTKVECALL

Query:  REILVGYGRASGQCINFSKSALLFSPNVHIEKGEV------------------------------WNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQA
        + I   YG ASGQ  N+ KS++LFS NVH  + E+                              +N +K R+W  +  W+  LFS GG+EV+IK++ QA
Subjt:  REILVGYGRASGQCINFSKSALLFSPNVHIEKGEV------------------------------WNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQA

Query:  IPSYAMSVFRLPKGFCNEVSKMFARFWWGS
        +P+YAMSVF+LP   C ++ K  ARFWWGS
Subjt:  IPSYAMSVFRLPKGFCNEVSKMFARFWWGS

XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]1.2e-2441.29Show/hide
Query:  SISYLL--DDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHIEKGEV------------------------------WNFLKDRLWK
        SIS+LL  DDSL+F   T+ +C+ L+ I   YG ASGQ  N+ KS++LFS NVH  + E+                              +N  K R+W 
Subjt:  SISYLL--DDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHIEKGEV------------------------------WNFLKDRLWK

Query:  LVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGS
         +  W+  LFS GG+EV+IK++ QA+P+YAMSVF+LP   C ++ K  ARFWWGS
Subjt:  LVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGS

XP_030479133.1 uncharacterized protein LOC115696372 [Cannabis sativa]1.2e-2434.53Show/hide
Query:  LLSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHAL---PSSISYLL--DDSLIFLNTTKVECALLREILVGY
        + S +  G+    + PP    LR   P   + P LFL     + L+ LL+ EE   + +  A+     SIS+L   DDSL+F       C  ++  L  Y
Subjt:  LLSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHAL---PSSISYLL--DDSLIFLNTTKVECALLREILVGY

Query:  GRASGQCINFSKSALLFSPNVHI------------------------------EKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMS
         RASGQ +N  KS + FSPN  I                              +K ++++ +K+++WKL+  W   +FS+GGKEV++K++ Q+IP+YAMS
Subjt:  GRASGQCINFSKSALLFSPNVHI------------------------------EKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMS

Query:  VFRLPKGFCNEVSKMFARFWWGS
         FRLP   CNE+  M A+FWWGS
Subjt:  VFRLPKGFCNEVSKMFARFWWGS

XP_030483769.1 uncharacterized protein LOC115700339 [Cannabis sativa]1.4e-2537.77Show/hide
Query:  FLPLGIEDDLACLLELEEIYWKQRSHAL---PSSISYLL--DDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHI------------
        +L L   + L+ LL+ EE   + +  A+     +IS+LL  DDSL+F   T   C  ++  L  Y RASGQ +N  KS + FSPN  +            
Subjt:  FLPLGIEDDLACLLELEEIYWKQRSHAL---PSSISYLL--DDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHI------------

Query:  ------------------EKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGS
                          +K ++++ +K+++WKL+  W   +FS+GGKEV++K++ Q+IP+YAMS FRL K FCNEV  M ARFWWGS
Subjt:  ------------------EKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGS

XP_030509046.1 uncharacterized protein LOC115723707 [Cannabis sativa]1.1e-2541.82Show/hide
Query:  EDDLACLLELEEIYWKQRSHALPSSISYLL--DDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHIE----------------KGEV
        E+ L  LL L     K   HA   S+S+LL  DDSL+F +        ++ IL  Y +ASGQ +N +KS + FSPN   +                K E+
Subjt:  EDDLACLLELEEIYWKQRSHALPSSISYLL--DDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHIE----------------KGEV

Query:  WNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGS
        ++ +K+R+WKL+  W + LFSVGGKEV++K++ Q+IP+YAMS FRLP  FCN++  M A FWWG+
Subjt:  WNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGS

TrEMBL top hitse value%identityAlignment
A0A2N9EWI8 Uncharacterized protein4.5e-2537.21Show/hide
Query:  GQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLEL----EEIYWKQRSHALPS-SISYLLDDSLIFLNTTKVECALLREILVGYGRASGQC
        G PK  ++P     LR   P   + P LFL     + L+ LL      E I     S   P  S  +  DDSLIF   T+ +C  L++IL  Y RASGQ 
Subjt:  GQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLEL----EEIYWKQRSHALPS-SISYLLDDSLIFLNTTKVECALLREILVGYGRASGQC

Query:  INFSKSALLFSPN------------------------------VHIEKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKG
        IN  K+AL FS N                              +   K + ++ +KDR+W+ +QGWK+   S  GKE++IK++ QAIP+YAMS F+LP G
Subjt:  INFSKSALLFSPN------------------------------VHIEKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKG

Query:  FCNEVSKMFARFWWG
         C+E+S M  RFWWG
Subjt:  FCNEVSKMFARFWWG

A0A2N9GJ35 Uncharacterized protein2.6e-2534.84Show/hide
Query:  GQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHALPSSIS-----------YLLDDSLIFLNTTKVECALLREILVGYG
        G+PK  I P     LR   P   + P LF        L C   L  +  K    +L   +S           +  DDS++F   T  +C  L+ +L  Y 
Subjt:  GQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHALPSSIS-----------YLLDDSLIFLNTTKVECALLREILVGYG

Query:  RASGQCINFSKSALLFSPN------------------------------VHIEKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSV
         ASGQ +N  K+AL FSPN                              V   K   +N +KDR+W+ +QGWK+ L S  G+EV+IK++ QAIP+YAMS 
Subjt:  RASGQCINFSKSALLFSPN------------------------------VHIEKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSV

Query:  FRLPKGFCNEVSKMFARFWWG
        F+LP GFC+E+  M  RFWWG
Subjt:  FRLPKGFCNEVSKMFARFWWG

A0A2N9IZB6 Reverse transcriptase domain-containing protein4.5e-2542.28Show/hide
Query:  YLLDDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFS------------------------------PNVHIEKGEVWNFLKDRLWKLVQGW
        +  DDS+IF     +EC  L+EIL  YGRASGQ +N  K+AL FS                              P +   K   +N +KDR+WK +QGW
Subjt:  YLLDDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFS------------------------------PNVHIEKGEVWNFLKDRLWKLVQGW

Query:  KQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWG
        K+ L S  G+EV+IK++ QAIP+YAMS F+ P G C E+S M  RFWWG
Subjt:  KQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWG

A0A803PYQ3 Uncharacterized protein2.6e-2536.13Show/hide
Query:  FLPLGIEDDLACLLELEEIYWKQRSHALPSSIS---------YLLDDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHIE-------
        +L L   + L+ L+ L+    + R+ ++   I+         +  DDSLIF + +      ++ IL  Y  ASGQ +NFSKSAL FSPN   E       
Subjt:  FLPLGIEDDLACLLELEEIYWKQRSHALPSSIS---------YLLDDSLIFLNTTKVECALLREILVGYGRASGQCINFSKSALLFSPNVHIE-------

Query:  -----------------------KGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWG
                               K E +N++KDR+W  +  W   LFS GGKEV++KS+ QAIPSYAM+ F+LP  F +++  M ARFWWG
Subjt:  -----------------------KGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWG

A0A803PZ04 Uncharacterized protein2.6e-2535.59Show/hide
Query:  LSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHA---LPSSISYLL--DDSLIFLNTTKVECALLREILVGYG
        LS +  G  K  + P     LR   P   + P LFL     + L+ LL+ EE   + +  +   L  ++S+LL  DDSL+F + T+  C  +R +L  Y 
Subjt:  LSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHA---LPSSISYLL--DDSLIFLNTTKVECALLREILVGYG

Query:  RASGQCINFSKSALLFSPNV---------HI---------------------EKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSV
        RASGQ +N  K+ + FSPN          H+                     +K E+++ +KD +WKL+  W   LFS+GG+E+++K++ Q+IP+YAMS 
Subjt:  RASGQCINFSKSALLFSPNV---------HI---------------------EKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSV

Query:  FRLPKGFCNEVSKMFARFWWGS
        F LPK FCN++  M A FWWGS
Subjt:  FRLPKGFCNEVSKMFARFWWGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTTTCTCTAACTCTTTTCTTGCTGCTAAGGTTCATCATCTTTGCTGGTCTAAGTCCGACCATAGAGCTATTGCTCTCGAGCTCCAGCCGCGGTCAACCAAAAGA
AGAAATCGAGCCGCCCAACCTTTCCAATTTGAGGAATGTTGGACCGGAAATCCAGATTGTGCCCACATTATTTCTACCGCTGGGAATTGAGGATGATCTTGCCTGCCTTC
TTGAGTTGGAGGAAATCTATTGGAAGCAGCGGTCTCATGCCCTGCCATCTTCCATCTCCTATTTGCTTGATGATAGTTTAATCTTCCTCAATACCACTAAGGTTGAATGT
GCTCTTCTTCGAGAAATTTTGGTTGGATATGGGCGAGCTTCGGGCCAATGTATTAATTTCTCCAAATCGGCTCTCCTCTTCTCTCCTAATGTCCATATTGAGAAAGGAGA
GGTCTGGAACTTTCTCAAGGATAGGCTTTGGAAATTGGTGCAGGGCTGGAAACAGAATTTATTTTCTGTTGGTGGCAAGGAAGTCATCATCAAAAGCATTGGGCAAGCTA
TCCCTTCATATGCCATGAGTGTTTTCAGGCTTCCCAAAGGTTTTTGTAATGAGGTTTCCAAAATGTTTGCTAGATTTTGGTGGGGTTCAATTCACTCGATGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGGTTTCTCTAACTCTTTTCTTGCTGCTAAGGTTCATCATCTTTGCTGGTCTAAGTCCGACCATAGAGCTATTGCTCTCGAGCTCCAGCCGCGGTCAACCAAAAGA
AGAAATCGAGCCGCCCAACCTTTCCAATTTGAGGAATGTTGGACCGGAAATCCAGATTGTGCCCACATTATTTCTACCGCTGGGAATTGAGGATGATCTTGCCTGCCTTC
TTGAGTTGGAGGAAATCTATTGGAAGCAGCGGTCTCATGCCCTGCCATCTTCCATCTCCTATTTGCTTGATGATAGTTTAATCTTCCTCAATACCACTAAGGTTGAATGT
GCTCTTCTTCGAGAAATTTTGGTTGGATATGGGCGAGCTTCGGGCCAATGTATTAATTTCTCCAAATCGGCTCTCCTCTTCTCTCCTAATGTCCATATTGAGAAAGGAGA
GGTCTGGAACTTTCTCAAGGATAGGCTTTGGAAATTGGTGCAGGGCTGGAAACAGAATTTATTTTCTGTTGGTGGCAAGGAAGTCATCATCAAAAGCATTGGGCAAGCTA
TCCCTTCATATGCCATGAGTGTTTTCAGGCTTCCCAAAGGTTTTTGTAATGAGGTTTCCAAAATGTTTGCTAGATTTTGGTGGGGTTCAATTCACTCGATGAGTTAG
Protein sequenceShow/hide protein sequence
MTVSLTLFLLLRFIIFAGLSPTIELLLSSSSRGQPKEEIEPPNLSNLRNVGPEIQIVPTLFLPLGIEDDLACLLELEEIYWKQRSHALPSSISYLLDDSLIFLNTTKVEC
ALLREILVGYGRASGQCINFSKSALLFSPNVHIEKGEVWNFLKDRLWKLVQGWKQNLFSVGGKEVIIKSIGQAIPSYAMSVFRLPKGFCNEVSKMFARFWWGSIHSMS