; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc11g29290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g29290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr11:21334020..21338384
RNA-Seq ExpressionMoc11g29290
SyntenyMoc11g29290
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5932129.1 hypothetical protein HYC85_028300 [Camellia sinensis]5.0e-2961.82Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML KK T  +IE SAL+++  ANKA+N+  + ++K RVWCD+CNKPRHTRETCWK+HGKP NWKS+K GEK+ G     +  AN  DS  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSG
        KL+K+NSS+G
Subjt:  KLLKTNSSSG

KAF5955000.1 hypothetical protein HYC85_007856 [Camellia sinensis]1.3e-2961.4Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML K+ T+ +IE SAL+++A ANKA+N+  + ++K RVWCD+CNKPRHTRETCWK+HGKP NWKS+K GEK+ G     +  AN  DS  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSGNPSG
        KL+K+NSSSG   G
Subjt:  KLLKTNSSSGNPSG

XP_006471430.1 uncharacterized protein LOC102629445 [Citrus sinensis]2.1e-2756.3Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML K++   +IE SAL+ +A A K +N+  + ++KS+ WCD+C+KPRHTRE CWKLHGKP NWKS+K GEK+ G       +AN  +S  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSGNPSGSLAQS
        KL+K+N SSG PS SLA++
Subjt:  KLLKTNSSSGNPSGSLAQS

XP_028102206.1 uncharacterized protein LOC114301453 [Camellia sinensis]4.1e-3163.03Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML KK T  +IE SAL+++A ANKA+N+    + K RVWCD+CNKPRHTRETCWK+HGKP NWKS+K GEK+ G     +  AN  DS  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSGNPSGSLAQS
        KL+K+NSSSG PS  LAQ+
Subjt:  KLLKTNSSSGNPSGSLAQS

XP_028105813.1 uncharacterized protein LOC114304864 [Camellia sinensis]1.8e-3162.18Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML KK T+ +IE S+L+++A ANKA+N+  + ++K RVWCD+CNKPRHTRETCWK+HGKP NWKS+K GEK+ G     +  AN  DS  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSGNPSGSLAQS
        KL+K+NSSSG PS  LAQ+
Subjt:  KLLKTNSSSGNPSGSLAQS

TrEMBL top hitse value%identityAlignment
A0A2N9FDL4 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-2650Show/hide
Query:  MLGKKTTNNTIEGSALV-NEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQL
        MLGKK     +E SALV  +A ++KA  +  + N+K  VWCDYCNKPRHTRETCWK+HGKPANWKS+KP +KSG     ++  AN  +   F KEQ++ L
Subjt:  MLGKKTTNNTIEGSALV-NEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQL

Query:  LKLLKTNSSSGNPSGSLAQSAHFATVTTSLLPLSPAVFAATASSSARS
        L LLK+NSSSG PS S+AQ+A++  +   +LP    +      SS R+
Subjt:  LKLLKTNSSSGNPSGSLAQSAHFATVTTSLLPLSPAVFAATASSSARS

A0A2N9GQ49 Uncharacterized protein1.9e-2654.92Show/hide
Query:  MLGKKTTNNTIEGSALV-NEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQL
        MLGKK     +E SALV  +A ++KA  +  + ++K +VWCDYCNKPRHTRETCWK+HGKPANWKS+KPG++SG     ++  AN  +   F KEQ++ L
Subjt:  MLGKKTTNNTIEGSALV-NEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQL

Query:  LKLLKTNSSSGNPSGSLAQSAH
        L LLK+NSSSG PS S+AQ+ +
Subjt:  LKLLKTNSSSGNPSGSLAQSAH

A0A2N9I543 Uncharacterized protein6.6e-2755.74Show/hide
Query:  MLGKKTTNNTIEGSALV-NEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQL
        MLGKK     +E SALV  +A ++KA  +  + ++K RVWCDYCNKPRHTRETCWK+HGKPANWKS+KPG++SG     ++  AN  +   F KEQ++ L
Subjt:  MLGKKTTNNTIEGSALV-NEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQL

Query:  LKLLKTNSSSGNPSGSLAQSAH
        L LLK+NSSSG PS S+AQ+ +
Subjt:  LKLLKTNSSSGNPSGSLAQSAH

A0A7J7FV14 Helicase ATP-binding domain-containing protein2.4e-2961.82Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML KK T  +IE SAL+++  ANKA+N+  + ++K RVWCD+CNKPRHTRETCWK+HGKP NWKS+K GEK+ G     +  AN  DS  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSG
        KL+K+NSS+G
Subjt:  KLLKTNSSSG

A0A7J7HQ55 Uncharacterized protein6.3e-3061.4Show/hide
Query:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL
        ML K+ T+ +IE SAL+++A ANKA+N+  + ++K RVWCD+CNKPRHTRETCWK+HGKP NWKS+K GEK+ G     +  AN  DS  FNKEQIDQLL
Subjt:  MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLL

Query:  KLLKTNSSSGNPSG
        KL+K+NSSSG   G
Subjt:  KLLKTNSSSGNPSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCAAGAAAACTACAAACAACACAATCGAAGGTTCTGCATTGGTGAATGAGGCAGTTGCTAATAAAGCTTCAAATCATCATAATAAAGGGAATGAGAAA
TCTCGTGTTTGGTGTGACTATTGTAATAAACCTCGACATACCCGTGAAACTTGCTGGAAGCTTCATGGAAAACCGGCAAATTGGAAGAGTAATAAACCAGGTGAG
AAGAGCGGTGGCAACCAGGTATCTAGTTATTCCAATGCAAATACTGTTGATTCTTACCAGTTCAATAAAGAGCAAATTGATCAACTTCTAAAGCTGCTAAAGACT
AATTCATCATCTGGTAATCCTAGTGGTTCTTTGGCACAATCAGCACACTTTGCCACCGTCACCACCTCTTTGCTTCCGCTGTCACCCGCCGTCTTTGCCGCCACC
GCCTCTTCCTCTGCTAGATCTGAAATAGAAACCTCTTATTCCACCAAACGAAACGAAGAGCTCTTTGTTTCTTCTTCTTCCAGACGTGGAAGAGGAACGTTTATC
TTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCAAGAAAACTACAAACAACACAATCGAAGGTTCTGCATTGGTGAATGAGGCAGTTGCTAATAAAGCTTCAAATCATCATAATAAAGGGAATGAGAAA
TCTCGTGTTTGGTGTGACTATTGTAATAAACCTCGACATACCCGTGAAACTTGCTGGAAGCTTCATGGAAAACCGGCAAATTGGAAGAGTAATAAACCAGGTGAG
AAGAGCGGTGGCAACCAGGTATCTAGTTATTCCAATGCAAATACTGTTGATTCTTACCAGTTCAATAAAGAGCAAATTGATCAACTTCTAAAGCTGCTAAAGACT
AATTCATCATCTGGTAATCCTAGTGGTTCTTTGGCACAATCAGCACACTTTGCCACCGTCACCACCTCTTTGCTTCCGCTGTCACCCGCCGTCTTTGCCGCCACC
GCCTCTTCCTCTGCTAGATCTGAAATAGAAACCTCTTATTCCACCAAACGAAACGAAGAGCTCTTTGTTTCTTCTTCTTCCAGACGTGGAAGAGGAACGTTTATC
TTCTAA
Protein sequenceShow/hide protein sequence
MLGKKTTNNTIEGSALVNEAVANKASNHHNKGNEKSRVWCDYCNKPRHTRETCWKLHGKPANWKSNKPGEKSGGNQVSSYSNANTVDSYQFNKEQIDQLLKLLKT
NSSSGNPSGSLAQSAHFATVTTSLLPLSPAVFAATASSSARSEIETSYSTKRNEELFVSSSSRRGRGTFIF