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Moc11g29320 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g29320
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:21361603..21361998
RNA-Seq ExpressionMoc11g29320
SyntenyMoc11g29320
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0009987 - cellular process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN79309.1 hypothetical protein VITISV_020559 [Vitis vinifera]1.2e-1648.36Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSST--FDCNLM---------------------SMHVNGGLKRNVMK
        MRSHVEA+GTC L+LS+GF+L+LEKT    +FS NLISVS+++P GY  +F  +S +  +  NL+                     +MHV+ G KR VM 
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSST--FDCNLM---------------------SMHVNGGLKRNVMK

Query:  KKSSMLWYRRLGHISIKRIKKL
        + S MLW+RRLGHISI+RIK+L
Subjt:  KKSSMLWYRRLGHISIKRIKKL

KAA8529810.1 hypothetical protein F0562_034333 [Nyssa sinensis]9.5e-1748.36Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF-----------------------DCNLMSMHVNGGLKRNVMK
        MRSHV+++GTC LILS+GFVL LEKT    +FS NLISVS+L+P GY   F  +S +                        D    +MHV+ G+KR V+ 
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF-----------------------DCNLMSMHVNGGLKRNVMK

Query:  KKSSMLWYRRLGHISIKRIKKL
        K SS LW+RRLGHISI+RIK+L
Subjt:  KKSSMLWYRRLGHISIKRIKKL

KYP50704.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]2.5e-1748.78Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM
        M SHVEA+GTC L+LS+GF+L+LEKT    +FS NLIS+S+L P G+   F  S  T                         D    SMHV+ GLKR VM
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM

Query:  KKKSSMLWYRRLGHISIKRIKKL
         + SSMLW+RRLGHISI RIK+L
Subjt:  KKKSSMLWYRRLGHISIKRIKKL

KYP61936.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]1.9e-1748.78Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM
        M SHVEA+GTC L+LS+GF+L+LEKT    +FS NLIS+S+L P G+   F  S  T                         D    SMHV+ GLKR VM
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM

Query:  KKKSSMLWYRRLGHISIKRIKKL
         + SSMLW+RRLGHISI RIK+L
Subjt:  KKKSSMLWYRRLGHISIKRIKKL

KYP76956.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]1.9e-1748.78Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM
        M SHVEA+GTC L+LS+GF+L+LEKT    +FS NLIS+S+L P G+   F  S  T                         D    SMHV+ GLKR VM
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM

Query:  KKKSSMLWYRRLGHISIKRIKKL
         + SSMLW+RRLGHISI RIK+L
Subjt:  KKKSSMLWYRRLGHISIKRIKKL

TrEMBL top hitse value%identityAlignment
A0A151S7D3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-1748.78Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM
        M SHVEA+GTC L+LS+GF+L+LEKT    +FS NLIS+S+L P G+   F  S  T                         D    SMHV+ GLKR VM
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM

Query:  KKKSSMLWYRRLGHISIKRIKKL
         + SSMLW+RRLGHISI RIK+L
Subjt:  KKKSSMLWYRRLGHISIKRIKKL

A0A151T4F7 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-1848.78Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM
        M SHVEA+GTC L+LS+GF+L+LEKT    +FS NLIS+S+L P G+   F  S  T                         D    SMHV+ GLKR VM
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM

Query:  KKKSSMLWYRRLGHISIKRIKKL
         + SSMLW+RRLGHISI RIK+L
Subjt:  KKKSSMLWYRRLGHISIKRIKKL

A0A151UCA2 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-1848.78Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM
        M SHVEA+GTC L+LS+GF+L+LEKT    +FS NLIS+S+L P G+   F  S  T                         D    SMHV+ GLKR VM
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF------------------------DCNLMSMHVNGGLKRNVM

Query:  KKKSSMLWYRRLGHISIKRIKKL
         + SSMLW+RRLGHISI RIK+L
Subjt:  KKKSSMLWYRRLGHISIKRIKKL

A0A5J5AGU0 CCHC-type domain-containing protein4.6e-1748.36Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF-----------------------DCNLMSMHVNGGLKRNVMK
        MRSHV+++GTC LILS+GFVL LEKT    +FS NLISVS+L+P GY   F  +S +                        D    +MHV+ G+KR V+ 
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSSTF-----------------------DCNLMSMHVNGGLKRNVMK

Query:  KKSSMLWYRRLGHISIKRIKKL
        K SS LW+RRLGHISI+RIK+L
Subjt:  KKSSMLWYRRLGHISIKRIKKL

A5BTR2 Integrase catalytic domain-containing protein6.0e-1748.36Show/hide
Query:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSST--FDCNLM---------------------SMHVNGGLKRNVMK
        MRSHVEA+GTC L+LS+GF+L+LEKT    +FS NLISVS+++P GY  +F  +S +  +  NL+                     +MHV+ G KR VM 
Subjt:  MRSHVEAIGTCRLILSTGFVLDLEKT----TFSINLISVSKLLPCGYVLNFCGSSST--FDCNLM---------------------SMHVNGGLKRNVMK

Query:  KKSSMLWYRRLGHISIKRIKKL
        + S MLW+RRLGHISI+RIK+L
Subjt:  KKSSMLWYRRLGHISIKRIKKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCACATGTGGAAGCTATTGGAACCTGTCGTCTTATTCTGTCTACCGGCTTTGTTTTGGACCTTGAAAAAACTACTTTTTCCATAAACCTAATTTCGGTTTCTAA
ACTTTTACCTTGTGGATATGTCCTTAACTTTTGTGGTAGTTCATCTACTTTTGATTGCAACCTTATGTCTATGCATGTTAACGGCGGTTTAAAGCGAAATGTTATGAAGA
AAAAGTCTTCCATGTTATGGTATAGGAGATTAGGTCATATCTCCATTAAGAGAATTAAGAAATTAGCCGAAAGGCAAAACCGAACATTAATGGACATGGTAAGATGCATG
ATTAGTAACTCTAGTTACCATTGTCATTGTGGAGTGAAGCCCTTAAAACAGCTGTGTATGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCACATGTGGAAGCTATTGGAACCTGTCGTCTTATTCTGTCTACCGGCTTTGTTTTGGACCTTGAAAAAACTACTTTTTCCATAAACCTAATTTCGGTTTCTAA
ACTTTTACCTTGTGGATATGTCCTTAACTTTTGTGGTAGTTCATCTACTTTTGATTGCAACCTTATGTCTATGCATGTTAACGGCGGTTTAAAGCGAAATGTTATGAAGA
AAAAGTCTTCCATGTTATGGTATAGGAGATTAGGTCATATCTCCATTAAGAGAATTAAGAAATTAGCCGAAAGGCAAAACCGAACATTAATGGACATGGTAAGATGCATG
ATTAGTAACTCTAGTTACCATTGTCATTGTGGAGTGAAGCCCTTAAAACAGCTGTGTATGTATTAA
Protein sequenceShow/hide protein sequence
MRSHVEAIGTCRLILSTGFVLDLEKTTFSINLISVSKLLPCGYVLNFCGSSSTFDCNLMSMHVNGGLKRNVMKKKSSMLWYRRLGHISIKRIKKLAERQNRTLMDMVRCM
ISNSSYHCHCGVKPLKQLCMY